2DPK

The Crystal Structure of the Primary Ca2+ Sensor of the Na+/Ca2+ Exchanger


X-RAY DIFFRACTION

Crystallization

Crystal Properties
Matthews coefficientSolvent content
2.3347.16

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 59.624α = 90
b = 45.524β = 90
c = 57.269γ = 90
Symmetry
Space GroupP 21 21 2

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONALS BEAMLINE 8.2.21.0ALS8.2.2

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
12.590935791538622

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (All)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUT2.557.26538625798.330.225140.225140.222330.28364RANDOM42.205
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
-3.39-3.226.62
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg28.302
r_dihedral_angle_4_deg16.358
r_dihedral_angle_3_deg12.107
r_dihedral_angle_1_deg6.095
r_scangle_it4.672
r_mcangle_it4.574
r_mcbond_it3.222
r_scbond_it3.205
r_angle_refined_deg1.326
r_mcbond_other0.959
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg28.302
r_dihedral_angle_4_deg16.358
r_dihedral_angle_3_deg12.107
r_dihedral_angle_1_deg6.095
r_scangle_it4.672
r_mcangle_it4.574
r_mcbond_it3.222
r_scbond_it3.205
r_angle_refined_deg1.326
r_mcbond_other0.959
r_angle_other_deg0.803
r_symmetry_vdw_other0.229
r_nbd_refined0.211
r_nbd_other0.182
r_xyhbond_nbd_refined0.176
r_nbtor_refined0.171
r_symmetry_hbond_refined0.152
r_metal_ion_refined0.121
r_symmetry_vdw_refined0.114
r_chiral_restr0.082
r_nbtor_other0.079
r_xyhbond_nbd_other0.057
r_bond_refined_d0.007
r_gen_planes_refined0.003
r_bond_other_d0.001
r_gen_planes_other0.001
r_metal_ion_other
r_symmetry_hbond_other
r_symmetry_metal_ion_refined
r_symmetry_metal_ion_other
r_rigid_bond_restr
r_sphericity_free
r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms944
Nucleic Acid Atoms
Solvent Atoms17
Heterogen Atoms23

Software

Software
Software NamePurpose
REFMACrefinement