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structure of hPoli with DNA and dTTP
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 2ALZ PDB entry 2ALZ
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 6.5 16% PEG 5K MME, 0.4M Ammonium Sulfate, 0.1M MES buffer, pH 6.5, VAPOR DIFFUSION, HANGING DROP
Crystal Properties Matthews coefficient Solvent content 2.87 57.16
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 98.059 α = 90 b = 98.059 β = 90 c = 203.102 γ = 120
Symmetry Space Group P 65 2 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 210 2005-07-18 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 17-ID APS 17-ID
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.3 50 99.3 0.046 45.6 10.5 26535
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.3 0.283 8.9
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB entry 2ALZ 2.3 36.76 22903 1964 93.99 0.2412 0.23805 0.232 0.277 0.2728 RANDOM 38.591
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.61 0.3 0.61 -0.91
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_1_deg 7.612 r_scangle_it 6.179 r_scbond_it 4.307 r_mcangle_it 3.143 r_angle_refined_deg 2.865 r_mcbond_it 1.796 r_symmetry_vdw_refined 0.365 r_symmetry_hbond_refined 0.31 r_nbd_refined 0.3 r_xyhbond_nbd_refined 0.218
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_1_deg 7.612 r_scangle_it 6.179 r_scbond_it 4.307 r_mcangle_it 3.143 r_angle_refined_deg 2.865 r_mcbond_it 1.796 r_symmetry_vdw_refined 0.365 r_symmetry_hbond_refined 0.31 r_nbd_refined 0.3 r_xyhbond_nbd_refined 0.218 r_chiral_restr 0.197 r_bond_refined_d 0.037 r_gen_planes_refined 0.016
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2876 Nucleic Acid Atoms 323 Solvent Atoms 127 Heterogen Atoms 31
Software Software Software Name Purpose REFMAC refinement ADSC data collection DENZO data reduction SCALEPACK data scaling CNS phasing