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Crystal Structure of Formaldehyde dismutase
Crystallization Crystal Properties Matthews coefficient Solvent content 2.69 54.23
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 90.229 α = 90 b = 90.229 β = 90 c = 226.689 γ = 90
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 4 2002-02-06 M MAD
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SPRING-8 BEAMLINE BL38B1 1.2736, 1.2832, 1.2827 SPring-8 BL38B1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.27 41.92 99.8 0.059 8.7 3.77 41645 41519
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.27 2.35 99.3 0.201 3 3.33
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MAD THROUGHOUT 2.27 41.92 39428 2085 100 0.209 0.207 0.25 0.249 RANDOM 31.09
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.82 0.82 -1.64
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.862 r_dihedral_angle_3_deg 14.896 r_dihedral_angle_4_deg 14.641 r_dihedral_angle_1_deg 6.177 r_scangle_it 1.895 r_angle_refined_deg 1.273 r_scbond_it 1.241 r_mcangle_it 0.794 r_mcbond_it 0.458 r_nbtor_refined 0.299
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.862 r_dihedral_angle_3_deg 14.896 r_dihedral_angle_4_deg 14.641 r_dihedral_angle_1_deg 6.177 r_scangle_it 1.895 r_angle_refined_deg 1.273 r_scbond_it 1.241 r_mcangle_it 0.794 r_mcbond_it 0.458 r_nbtor_refined 0.299 r_symmetry_vdw_refined 0.203 r_nbd_refined 0.185 r_symmetry_hbond_refined 0.14 r_xyhbond_nbd_refined 0.123 r_chiral_restr 0.081 r_metal_ion_refined 0.065 r_bond_refined_d 0.009 r_gen_planes_refined 0.003 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_other r_nbtor_other r_xyhbond_nbd_other r_metal_ion_other r_symmetry_vdw_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 6016 Nucleic Acid Atoms Solvent Atoms 266 Heterogen Atoms 92
Software Software Software Name Purpose REFMAC refinement d*TREK data scaling MLPHARE phasing