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Crystal structure of a multidrug transporter reveal a functionally rotating mechanism
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP PEG4000, PH 6.1, VAPOR DIFFUSION, SITTING DROP
Crystal Properties Matthews coefficient Solvent content 3.58 65.65
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 225.87 α = 90 b = 134.418 β = 97.71 c = 163.192 γ = 90
Symmetry Space Group C 1 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315 2005-10-11 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SPRING-8 BEAMLINE BL41XU 1.000 SPring-8 BL41XU
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.8 50 99.3 0.076 35.3 17.3 117661
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 2.8 2.9 96.7 0.359 2.3 8.1
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MIR THROUGHOUT 2.8 10 109273 109273 5752 99 0.27 0.268 0.262 0.307 0.3071 RANDOM 93.704
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 11.2 8.66 -8.04 -0.84
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 44.214 r_dihedral_angle_3_deg 21.957 r_dihedral_angle_4_deg 20.129 r_dihedral_angle_1_deg 7.508 r_scangle_it 4.506 r_scbond_it 3.021 r_angle_refined_deg 2.515 r_mcangle_it 2.334 r_mcbond_it 1.427 r_symmetry_hbond_refined 0.432
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 44.214 r_dihedral_angle_3_deg 21.957 r_dihedral_angle_4_deg 20.129 r_dihedral_angle_1_deg 7.508 r_scangle_it 4.506 r_scbond_it 3.021 r_angle_refined_deg 2.515 r_mcangle_it 2.334 r_mcbond_it 1.427 r_symmetry_hbond_refined 0.432 r_nbd_refined 0.361 r_nbtor_refined 0.353 r_symmetry_vdw_refined 0.333 r_xyhbond_nbd_refined 0.26 r_chiral_restr 0.168 r_bond_refined_d 0.03 r_gen_planes_refined 0.009 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_other r_nbtor_other r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 23322 Nucleic Acid Atoms Solvent Atoms 56 Heterogen Atoms
Software Software Software Name Purpose SHARP phasing REFMAC refinement HKL-2000 data reduction HKL-2000 data scaling