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Crystal Structure of human ED-4F2hc
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 6 298 25% PEG 3350, 0,2M AMMONIUM SULFATE, pH 6, VAPOR DIFFUSION, HANGING DROP, temperature 298K
Crystal Properties Matthews coefficient Solvent content 2.31 46.65
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 69.497 α = 90 b = 101.786 β = 90 c = 121.966 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARRESEARCH KB-MIRROR 2003-11-28 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID13 0.9789 ESRF ID13
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.8 29.65 94 0.0665 15.74 7.1 19650 19650
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.8 2.9 96.2 0.3885 3.46 4.2
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 2.8 25 19304 19304 1066 94.56 0.21972 0.21972 0.21677 0.221 0.27508 0.282 RANDOM 49.063
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -1.67 -1.65 3.31
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.97 r_dihedral_angle_4_deg 16.89 r_dihedral_angle_3_deg 14.795 r_dihedral_angle_1_deg 5.601 r_angle_refined_deg 1.186 r_angle_other_deg 0.732 r_scangle_it 0.571 r_scbond_it 0.353 r_mcangle_it 0.338 r_mcbond_it 0.306
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.97 r_dihedral_angle_4_deg 16.89 r_dihedral_angle_3_deg 14.795 r_dihedral_angle_1_deg 5.601 r_angle_refined_deg 1.186 r_angle_other_deg 0.732 r_scangle_it 0.571 r_scbond_it 0.353 r_mcangle_it 0.338 r_mcbond_it 0.306 r_nbd_refined 0.178 r_nbtor_refined 0.166 r_nbd_other 0.159 r_xyhbond_nbd_refined 0.14 r_symmetry_vdw_other 0.139 r_symmetry_hbond_refined 0.098 r_symmetry_vdw_refined 0.091 r_nbtor_other 0.077 r_chiral_restr 0.055 r_mcbond_other 0.027 r_metal_ion_refined 0.018 r_bond_refined_d 0.006 r_gen_planes_refined 0.002 r_bond_other_d 0.001 r_gen_planes_other 0.001 r_xyhbond_nbd_other r_metal_ion_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 6504 Nucleic Acid Atoms Solvent Atoms 28 Heterogen Atoms 1
Software Software Software Name Purpose REFMAC refinement DENZO data reduction SCALEPACK data scaling AMoRE phasing