☰ Navigation Tabs
Crystal Structure of Mouse Apolipoprotein A-I Binding Protein
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 4.6 293 1.5M ammonium sulfate, 0.1M sodium acetate, pH 4.6, VAPOR DIFFUSION, HANGING DROP, temperature 293K
Crystal Properties Matthews coefficient Solvent content 2.89 57.39
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 104.855 α = 90 b = 125.745 β = 106.56 c = 163.62 γ = 90
Symmetry Space Group C 1 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD SBC-3 2005-06-15 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 19-BM 0.97898 APS 19-BM
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.45 80 98.8 0.083 22.4 4.4 69794 69794 -3
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 2.5 2.54 98.7 0.509 2.4 4.5
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT 2.45 80 69734 3691 98.29 0.20724 0.20612 0.2194 0.22844 0.241 RANDOM 40.881
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 2.44 2.7 -1.93 1.03
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 43.148 r_dihedral_angle_3_deg 17.924 r_dihedral_angle_4_deg 13.404 r_scangle_it 8.477 r_dihedral_angle_1_deg 6.572 r_scbond_it 5.964 r_mcangle_it 4.117 r_mcbond_it 2.852 r_angle_refined_deg 1.729 r_angle_other_deg 0.952
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 43.148 r_dihedral_angle_3_deg 17.924 r_dihedral_angle_4_deg 13.404 r_scangle_it 8.477 r_dihedral_angle_1_deg 6.572 r_scbond_it 5.964 r_mcangle_it 4.117 r_mcbond_it 2.852 r_angle_refined_deg 1.729 r_angle_other_deg 0.952 r_mcbond_other 0.434 r_symmetry_hbond_refined 0.262 r_nbd_refined 0.258 r_symmetry_vdw_refined 0.239 r_nbd_other 0.208 r_nbtor_refined 0.196 r_xyhbond_nbd_refined 0.187 r_symmetry_vdw_other 0.187 r_chiral_restr 0.098 r_nbtor_other 0.091 r_xyhbond_nbd_other 0.057 r_bond_refined_d 0.021 r_gen_planes_refined 0.007 r_gen_planes_other 0.003 r_bond_other_d 0.002 r_metal_ion_refined r_metal_ion_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 10830 Nucleic Acid Atoms Solvent Atoms 211 Heterogen Atoms 36
Software Software Software Name Purpose REFMAC refinement HKL-3000 data reduction HKL-3000 data scaling HKL-3000 phasing SHELXD phasing SHELXE model building MLPHARE phasing DM phasing SOLVE phasing RESOLVE phasing O model building Coot model building CCP4 phasing