☰ Navigation Tabs
Hyperthermophilic threonine dehydrogenase from Pyrococcus horikoshii
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 7.5 277 40% PEG 400, 0.2M sodium chloride, 0.1M HEPES, pH 7.5, VAPOR DIFFUSION, HANGING DROP, temperature 277K
Crystal Properties Matthews coefficient Solvent content 3.49 64.75
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 144.433 α = 90 b = 144.433 β = 90 c = 305.069 γ = 90
Symmetry Space Group I 41 2 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARRESEARCH 2004-09-30 M SAD
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SPRING-8 BEAMLINE BL41XU 0.9796 SPring-8 BL41XU
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2 1572057
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT 2.05 94587 4978 98.85 0.20568 0.20396 0.2043 0.23878 0.2391 RANDOM 22.029
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.32 0.32 -0.64
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 38.017 r_dihedral_angle_4_deg 17.506 r_dihedral_angle_1_deg 15.289 r_dihedral_angle_3_deg 14.125 r_scangle_it 4.338 r_scbond_it 2.992 r_angle_refined_deg 1.708 r_mcangle_it 1.649 r_mcbond_it 1.189 r_nbtor_refined 0.309
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 38.017 r_dihedral_angle_4_deg 17.506 r_dihedral_angle_1_deg 15.289 r_dihedral_angle_3_deg 14.125 r_scangle_it 4.338 r_scbond_it 2.992 r_angle_refined_deg 1.708 r_mcangle_it 1.649 r_mcbond_it 1.189 r_nbtor_refined 0.309 r_symmetry_hbond_refined 0.203 r_nbd_refined 0.2 r_symmetry_vdw_refined 0.17 r_xyhbond_nbd_refined 0.139 r_chiral_restr 0.12 r_bond_refined_d 0.019 r_gen_planes_refined 0.008 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_other r_nbtor_other r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 7944 Nucleic Acid Atoms Solvent Atoms 485 Heterogen Atoms 150
Software Software Software Name Purpose REFMAC refinement MOSFLM data reduction CCP4 data scaling SHARP phasing