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Crystal structure of the Radixin FERM domain complexed with the NHERF-1 C-terminal tail peptide
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1GC7
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 7.5 277 10% PEG4000, 5% Isopropanol, 0.1M HEPES, pH 7.5, VAPOR DIFFUSION, HANGING DROP, temperature 277K
Crystal Properties Matthews coefficient Solvent content 2.8 56
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 69.388 α = 90 b = 146.277 β = 90 c = 177.763 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 4 2001-12-05 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SPRING-8 BEAMLINE BL40B2 1.000 SPring-8 BL40B2
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.5 30 99.2 62668 62668
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 2.5 2.64 98.9
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1GC7 2.5 29.93 61240 1594 100 0.23026 0.22928 0.2283 0.2675 0.2672 RANDOM 38.43
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 2.47 -0.3 -2.17
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.427 r_dihedral_angle_4_deg 16.392 r_dihedral_angle_3_deg 15.1 r_dihedral_angle_1_deg 4.92 r_scangle_it 1.304 r_angle_refined_deg 0.972 r_scbond_it 0.765 r_mcangle_it 0.708 r_mcbond_it 0.397 r_nbtor_refined 0.298
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.427 r_dihedral_angle_4_deg 16.392 r_dihedral_angle_3_deg 15.1 r_dihedral_angle_1_deg 4.92 r_scangle_it 1.304 r_angle_refined_deg 0.972 r_scbond_it 0.765 r_mcangle_it 0.708 r_mcbond_it 0.397 r_nbtor_refined 0.298 r_nbd_refined 0.176 r_symmetry_vdw_refined 0.171 r_symmetry_hbond_refined 0.159 r_xyhbond_nbd_refined 0.133 r_chiral_restr 0.067 r_bond_refined_d 0.007 r_gen_planes_refined 0.002
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 10408 Nucleic Acid Atoms Solvent Atoms 617 Heterogen Atoms
Software Software Software Name Purpose REFMAC refinement MOSFLM data reduction CCP4 data scaling AMoRE phasing