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Crystal structure of ML2640 from Mycobacterium leprae
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model Other PREVIOUS MODEL OBTAINED FROM SAD PHASING
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 7.5 1.6 M AMMONIUM SULFATE, 0.1 M HEPES, PH 7.5, 50 MM MGCL2 (PROTEIN CONCENTRATION 11.8 MG/ML)
Crystal Properties Matthews coefficient Solvent content 2.9 56
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 96.78 α = 90 b = 96.78 β = 90 c = 169.367 γ = 90
Symmetry Space Group P 43 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM-210 2003-10-14 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID29 ESRF ID29
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.8 85 99.6 0.08 8 5.5 20669
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.8 2.95 99.9 0.25 3 5.6
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PREVIOUS MODEL OBTAINED FROM SAD PHASING 2.8 83.92 19338 1043 99.3 0.202 0.199 0.205 0.255 RANDOM 12.37
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.49 -0.49 0.98
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.973 r_dihedral_angle_3_deg 21.302 r_dihedral_angle_4_deg 20.382 r_dihedral_angle_1_deg 8.161 r_scangle_it 3.191 r_scbond_it 1.969 r_angle_refined_deg 1.826 r_mcangle_it 1.293 r_mcbond_it 0.765 r_nbtor_refined 0.327
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.973 r_dihedral_angle_3_deg 21.302 r_dihedral_angle_4_deg 20.382 r_dihedral_angle_1_deg 8.161 r_scangle_it 3.191 r_scbond_it 1.969 r_angle_refined_deg 1.826 r_mcangle_it 1.293 r_mcbond_it 0.765 r_nbtor_refined 0.327 r_nbd_refined 0.248 r_symmetry_vdw_refined 0.198 r_symmetry_hbond_refined 0.175 r_xyhbond_nbd_refined 0.149 r_chiral_restr 0.124 r_bond_refined_d 0.018 r_gen_planes_refined 0.006 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_other r_nbtor_other r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_mcangle_other r_scbond_other r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 4692 Nucleic Acid Atoms Solvent Atoms Heterogen Atoms
Software Software Software Name Purpose REFMAC refinement MOSFLM data reduction SCALA data scaling AMoRE phasing