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Azide inhibited bovine F1-ATPase
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1W0J PDB ENTRY 1W0J
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 8.2 50 MM TRIS-HCL PH 8.2, 200 MM NACL, 20 MM MGSO4, 250 UM AMP-PNP, 5 UM ADP, 3 MM NAN3, 0.004% (W/V) PHENYLMETHYLSULFONYL FLUORIDE AND 9% (W/V) POLYETHYLENE GLYCOL 6000.
Crystal Properties Matthews coefficient Solvent content 2.7 47
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 261.16 α = 90 b = 105.22 β = 90 c = 122.73 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC CCD MIRRORS 2005-09-18 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID14-4 ESRF ID14-4
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.9 20 98.8 0.08 9.2 3.5 244566 27.3
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.95 2 99.1 0.53 2 3.1
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 1W0J 1.95 20 242123 12048 98.6 0.197 0.2079 0.226 0.2347 RANDOM 26.49
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.75 -0.59 1.34
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.912 r_dihedral_angle_4_deg 15.75 r_dihedral_angle_3_deg 14.054 r_scangle_it 6.998 r_dihedral_angle_1_deg 5.142 r_scbond_it 4.961 r_mcangle_it 3.074 r_mcbond_it 2.282 r_angle_refined_deg 1.091 r_nbtor_refined 0.3
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.912 r_dihedral_angle_4_deg 15.75 r_dihedral_angle_3_deg 14.054 r_scangle_it 6.998 r_dihedral_angle_1_deg 5.142 r_scbond_it 4.961 r_mcangle_it 3.074 r_mcbond_it 2.282 r_angle_refined_deg 1.091 r_nbtor_refined 0.3 r_symmetry_hbond_refined 0.245 r_nbd_refined 0.189 r_symmetry_vdw_refined 0.148 r_xyhbond_nbd_refined 0.118 r_chiral_restr 0.077 r_metal_ion_refined 0.015 r_bond_refined_d 0.007 r_gen_planes_refined 0.003 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_other r_nbtor_other r_xyhbond_nbd_other r_metal_ion_other r_symmetry_vdw_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_mcangle_other r_scbond_other r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 23874 Nucleic Acid Atoms Solvent Atoms 2408 Heterogen Atoms 164
Software Software Software Name Purpose REFMAC refinement MOSFLM data reduction CCP4 data scaling AMoRE phasing