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Chloroperoxidase bromide complex
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1CPO PDB ENTRY 1CPO
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 3.6 22 % PEG3000, 0.1 M KBR, 0.1 M CITRATE PH 3.6
Crystal Properties Matthews coefficient Solvent content 2.6 52
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 57.5 α = 90 b = 150.8 β = 90 c = 100.35 γ = 90
Symmetry Space Group C 2 2 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARRESEARCH M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SLS BEAMLINE X10SA SLS X10SA
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.8 20 98.4 0.06 14.4 2.7 77290 2 20.5
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.8 1.85 94 0.11 8.2
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 1CPO 1.8 19.78 38402 2022 100 0.16 0.159 0.1576 0.184 0.1821 RANDOM 15.82
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.14 -1.01 0.87
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.186 r_dihedral_angle_4_deg 17.127 r_dihedral_angle_3_deg 11.508 r_dihedral_angle_1_deg 5.645 r_scangle_it 2.828 r_scbond_it 1.843 r_angle_refined_deg 1.334 r_mcangle_it 1.126 r_mcbond_it 0.698 r_nbtor_refined 0.313
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.186 r_dihedral_angle_4_deg 17.127 r_dihedral_angle_3_deg 11.508 r_dihedral_angle_1_deg 5.645 r_scangle_it 2.828 r_scbond_it 1.843 r_angle_refined_deg 1.334 r_mcangle_it 1.126 r_mcbond_it 0.698 r_nbtor_refined 0.313 r_nbd_refined 0.2 r_symmetry_vdw_refined 0.158 r_xyhbond_nbd_refined 0.146 r_symmetry_hbond_refined 0.132 r_chiral_restr 0.083 r_bond_refined_d 0.011 r_gen_planes_refined 0.005 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_other r_nbtor_other r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_mcangle_other r_scbond_other r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2316 Nucleic Acid Atoms Solvent Atoms 426 Heterogen Atoms 248
Software Software Software Name Purpose REFMAC refinement XDS data reduction XSCALE data scaling AMoRE phasing