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Bacteroides thetaiotaomicron hexosaminidase with O-GlcNAcase activity- NAG-thiazoline complex
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 6 0.5M NA ACETATE, 15% PEG 3500, 0.1M MES PH6, 20% GLYCEROL, pH 6.00
Crystal Properties Matthews coefficient Solvent content 2.76 55.1
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 51.714 α = 75.34 b = 94.544 β = 93.86 c = 99.479 γ = 77.07
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARRESEARCH M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID14-1 ESRF ID14-1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.95 50 98 0.09 12 4 117950
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.95 2 97 0.45 3 4
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT 1.95 39.84 117960 6255 96.7 0.187 0.185 0.1903 0.226 RANDOM 25.38
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.01 -0.01 0.05 -0.03
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.829 r_dihedral_angle_4_deg 17.116 r_dihedral_angle_3_deg 14.994 r_dihedral_angle_1_deg 6.156 r_scangle_it 3.507 r_scbond_it 2.406 r_mcangle_it 1.571 r_angle_refined_deg 1.548 r_mcbond_it 1.083 r_angle_other_deg 0.96
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.829 r_dihedral_angle_4_deg 17.116 r_dihedral_angle_3_deg 14.994 r_dihedral_angle_1_deg 6.156 r_scangle_it 3.507 r_scbond_it 2.406 r_mcangle_it 1.571 r_angle_refined_deg 1.548 r_mcbond_it 1.083 r_angle_other_deg 0.96 r_mcbond_other 0.24 r_symmetry_vdw_other 0.233 r_nbd_refined 0.213 r_nbd_other 0.19 r_symmetry_vdw_refined 0.189 r_xyhbond_nbd_refined 0.18 r_nbtor_refined 0.179 r_symmetry_hbond_refined 0.163 r_chiral_restr 0.089 r_nbtor_other 0.089 r_metal_ion_refined 0.088 r_bond_refined_d 0.017 r_gen_planes_refined 0.006 r_bond_other_d 0.002 r_gen_planes_other 0.001 r_xyhbond_nbd_other r_metal_ion_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcangle_other r_scbond_other r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 10531 Nucleic Acid Atoms Solvent Atoms 1103 Heterogen Atoms 54
Software Software Software Name Purpose REFMAC refinement MOSFLM data reduction SCALA data scaling