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Crystal structure of Arabidopsis thaliana aspartate kinase complexed with lysine and S- adenosylmethionine
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 6.5 0.2 M DI-SODIUM TARTRATE DIHYDRATE, 20 % PEG 3350, pH 6.50
Crystal Properties Matthews coefficient Solvent content 4.2 74
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 117.342 α = 90 b = 117.342 β = 90 c = 255.283 γ = 90
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARRESEARCH MIRRORS 2004-12-15 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE BM30A ESRF BM30A
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.85 30 96.6 0.072 8.3 3.1 38693
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.85 3 98.1 0.44 1.7 3
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 2.85 15.67 36566 1936 100 0.204 0.202 0.244 0.2123 RANDOM 62.32
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.55 0.55 -1.1
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.433 r_dihedral_angle_3_deg 18.169 r_dihedral_angle_4_deg 17.876 r_dihedral_angle_1_deg 5.556 r_scangle_it 1.615 r_angle_refined_deg 1.121 r_scbond_it 1.082 r_mcangle_it 0.766 r_mcbond_it 0.514 r_nbtor_refined 0.3
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.433 r_dihedral_angle_3_deg 18.169 r_dihedral_angle_4_deg 17.876 r_dihedral_angle_1_deg 5.556 r_scangle_it 1.615 r_angle_refined_deg 1.121 r_scbond_it 1.082 r_mcangle_it 0.766 r_mcbond_it 0.514 r_nbtor_refined 0.3 r_nbd_refined 0.201 r_symmetry_hbond_refined 0.158 r_xyhbond_nbd_refined 0.142 r_symmetry_vdw_refined 0.138 r_chiral_restr 0.077 r_bond_refined_d 0.007 r_gen_planes_refined 0.003 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_other r_nbtor_other r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_mcangle_other r_scbond_other r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 7232 Nucleic Acid Atoms Solvent Atoms 176 Heterogen Atoms 114
Software Software Software Name Purpose REFMAC refinement MOSFLM data reduction SCALA data scaling MOLREP phasing