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Sulfolobus solfataricus Glucose Dehydrogenase 1 - apo form
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details other THERMOPLASMA ACIDOPHILUM GDH
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 12 % PEG, 0.1 M MES (PH 5.75), 3% (V/V) PROPAN-2-OL
Crystal Properties Matthews coefficient Solvent content 2.7 53.8
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 68.501 α = 90 b = 90.31 β = 90 c = 138.941 γ = 90
Symmetry Space Group P 21 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 2004-06-12 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID14-3 ESRF ID14-3
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.8 38.1 96.7 0.07 12.8 3.6 73910 18.14
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.8 1.9 92.9 0.27 4 3.5
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT THERMOPLASMA ACIDOPHILUM GDH 1.8 141.42 77521 3905 96.2 0.193 0.191 0.1899 0.23 0.2276 RANDOM 20.62
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.039 1.092 -1.053
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 39.984 r_dihedral_angle_4_deg 17.797 r_dihedral_angle_3_deg 13.61 r_dihedral_angle_1_deg 6.063 r_scangle_it 3.695 r_scbond_it 2.515 r_angle_refined_deg 1.509 r_mcangle_it 1.486 r_mcbond_it 1.092 r_nbtor_refined 0.307
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 39.984 r_dihedral_angle_4_deg 17.797 r_dihedral_angle_3_deg 13.61 r_dihedral_angle_1_deg 6.063 r_scangle_it 3.695 r_scbond_it 2.515 r_angle_refined_deg 1.509 r_mcangle_it 1.486 r_mcbond_it 1.092 r_nbtor_refined 0.307 r_nbd_refined 0.204 r_symmetry_vdw_refined 0.177 r_xyhbond_nbd_refined 0.159 r_symmetry_hbond_refined 0.15 r_chiral_restr 0.105 r_bond_refined_d 0.016 r_gen_planes_refined 0.007 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_other r_nbtor_other r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_mcangle_other r_scbond_other r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 5693 Nucleic Acid Atoms Solvent Atoms 669 Heterogen Atoms 4
Software Software Software Name Purpose REFMAC refinement MOSFLM data reduction SCALA data scaling CNS phasing