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1.27Angstrom Structure of Rusticyanin from Thiobacillus ferrooxidans
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1A8Z PDB ENTRY 1A8Z
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 3.8 pH 3.80
Crystal Properties Matthews coefficient Solvent content 2.18 50.1
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 32.473 α = 90 b = 60.823 β = 108.01 c = 38.121 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 297 IMAGE PLATE MARRESEARCH MIRRORS M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SRS BEAMLINE PX9.6 SRS PX9.6
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.27 12 99.7 0.05 9.7 4 37281
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.27 1.3 100 0.39 2.2 3.2
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT FREE R-VALUE PDB ENTRY 1A8Z 1.27 12 71842 5514 100 0.1202 0.1207 0.1883 0.1378 0.1806 RANDOM
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3]
Coordinate Error Structure Solution Method Refinement High Resolution Refinement Low Resolution 12 1092 1272
RMS Deviations Key Refinement Restraint Deviation s_approx_iso_adps 0.108 s_non_zero_chiral_vol 0.103 s_zero_chiral_vol 0.1 s_similar_adp_cmpnt 0.046 s_anti_bump_dis_restr 0.031 s_from_restr_planes 0.0309 s_angle_d 0.03 s_bond_d 0.014 s_rigid_bond_adp_cmpnt 0.007 s_similar_dist
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1158 Nucleic Acid Atoms Solvent Atoms 86 Heterogen Atoms 1
Software Software Software Name Purpose SHELXL-97 refinement DENZO data reduction SCALEPACK data scaling AMoRE phasing