☰ Navigation Tabs
CRYSTAL STRUCTURE OF SOCS-2 IN COMPLEX WITH ELONGIN-B AND ELONGIN-C AT 1.9A RESOLUTION
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1O4H PDB ENTRIES 1O4H, 1LM8 experimental model PDB 1LM8 PDB ENTRIES 1O4H, 1LM8
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 277 2M AMSO4 0.2M NACL, 0.1M CACODYLATE PH 6.5 300 NL SITTING DROPS AT 4 DEGREES
Crystal Properties Matthews coefficient Solvent content 2.7 54.8
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 105.29 α = 90 b = 105.29 β = 90 c = 70.2 γ = 120
Symmetry Space Group P 32 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARRESEARCH MIRRORS 2005-11-18 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SLS BEAMLINE X10SA SLS X10SA
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.9 38.25 98.6 0.0726 28.9 11.6 395240 3
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.9 2 98.5 0.31 3.29 11.19
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRIES 1O4H, 1LM8 1.9 91.29 33443 1762 98.7 0.187 0.185 0.1853 0.225 0.2254 RANDOM 42.4
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.55 0.27 0.55 -0.82
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.314 r_dihedral_angle_4_deg 18.195 r_dihedral_angle_3_deg 13.712 r_scangle_it 6.814 r_dihedral_angle_1_deg 5.639 r_scbond_it 5.02 r_mcangle_it 3.094 r_mcbond_it 2.144 r_angle_refined_deg 1.209 r_nbtor_refined 0.31
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.314 r_dihedral_angle_4_deg 18.195 r_dihedral_angle_3_deg 13.712 r_scangle_it 6.814 r_dihedral_angle_1_deg 5.639 r_scbond_it 5.02 r_mcangle_it 3.094 r_mcbond_it 2.144 r_angle_refined_deg 1.209 r_nbtor_refined 0.31 r_nbd_refined 0.192 r_xyhbond_nbd_refined 0.151 r_symmetry_vdw_refined 0.149 r_symmetry_hbond_refined 0.115 r_chiral_restr 0.076 r_bond_refined_d 0.01 r_gen_planes_refined 0.005 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_other r_nbtor_other r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_mcangle_other r_scbond_other r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2621 Nucleic Acid Atoms Solvent Atoms 172 Heterogen Atoms 18
Software Software Software Name Purpose REFMAC refinement XDS data reduction XDS data scaling PHASER phasing