2C84

CRYSTAL STRUCTURE OF THE SIALYLTRANSFERASE PM0188 WITH CMP


X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
16.5pH 6.5
Crystal Properties
Matthews coefficientSolvent content
2.3948.22

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 65.712α = 90
b = 66.163β = 90
c = 101.94γ = 90
Symmetry
Space GroupP 21 21 21

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100 MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1ROTATING ANODERIGAKU R-AXIS IV

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
12.13096.20.1120.26.226832
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
12.12.1880.72.993

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUT2.3155.5618691100297.50.1950.1930.227RANDOM23.83
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
-0.90.9
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg42.884
r_dihedral_angle_4_deg18.89
r_dihedral_angle_3_deg15.553
r_sphericity_free6.868
r_scangle_it5.354
r_dihedral_angle_1_deg4.585
r_scbond_it4.158
r_rigid_bond_restr3.601
r_mcangle_it2.821
r_sphericity_bonded2.718
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg42.884
r_dihedral_angle_4_deg18.89
r_dihedral_angle_3_deg15.553
r_sphericity_free6.868
r_scangle_it5.354
r_dihedral_angle_1_deg4.585
r_scbond_it4.158
r_rigid_bond_restr3.601
r_mcangle_it2.821
r_sphericity_bonded2.718
r_mcbond_it2.402
r_angle_refined_deg1.681
r_nbtor_refined0.319
r_symmetry_vdw_refined0.296
r_nbd_refined0.244
r_symmetry_hbond_refined0.239
r_xyhbond_nbd_refined0.165
r_chiral_restr0.12
r_bond_refined_d0.021
r_gen_planes_refined0.009
r_bond_other_d
r_angle_other_deg
r_gen_planes_other
r_nbd_other
r_nbtor_other
r_xyhbond_nbd_other
r_metal_ion_refined
r_metal_ion_other
r_symmetry_vdw_other
r_symmetry_hbond_other
r_symmetry_metal_ion_refined
r_symmetry_metal_ion_other
r_mcbond_other
r_mcangle_other
r_scbond_other
r_scangle_other
r_long_range_B_refined
r_long_range_B_other
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms3106
Nucleic Acid Atoms
Solvent Atoms178
Heterogen Atoms21

Software

Software
Software NamePurpose
REFMACrefinement
HKL-2000data scaling
MOLREPphasing