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Structure of Sh28GST in complex with S-hexyl Glutathione
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1OE7 PDB ENTRY 1OE7
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 6 20%PEG3350, 0.2M MES PH 6.0, 5MM BETA-MERCAPTOETHANOL
Crystal Properties Matthews coefficient Solvent content 2.22 44.15
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 52.832 α = 90 b = 52.832 β = 90 c = 141.451 γ = 120
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARRESEARCH 2005-04-23 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ELETTRA BEAMLINE 5.2R ELETTRA 5.2R
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.3 47 99 0.12 11.3 3.5 18295 1
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.3 2.38 98.3 0.3 6.5 3.6
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 1OE7 2.3 47.14 18295 985 99 0.191 0.188 0.246 0.195 RANDOM 19.86
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.06 0.03 0.06 -0.09
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 30.17 r_dihedral_angle_4_deg 23.352 r_dihedral_angle_3_deg 14.402 r_dihedral_angle_1_deg 5.317 r_scangle_it 1.813 r_angle_refined_deg 1.186 r_scbond_it 1.138 r_mcangle_it 0.786 r_mcbond_it 0.452 r_nbtor_refined 0.302
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 30.17 r_dihedral_angle_4_deg 23.352 r_dihedral_angle_3_deg 14.402 r_dihedral_angle_1_deg 5.317 r_scangle_it 1.813 r_angle_refined_deg 1.186 r_scbond_it 1.138 r_mcangle_it 0.786 r_mcbond_it 0.452 r_nbtor_refined 0.302 r_nbd_refined 0.195 r_symmetry_vdw_refined 0.194 r_symmetry_hbond_refined 0.177 r_xyhbond_nbd_refined 0.148 r_chiral_restr 0.084 r_bond_refined_d 0.008 r_gen_planes_refined 0.003 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_other r_nbtor_other r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_mcangle_other r_scbond_other r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3322 Nucleic Acid Atoms Solvent Atoms 228 Heterogen Atoms 65
Software Software Software Name Purpose REFMAC refinement DENZO data reduction SCALEPACK data scaling AMoRE phasing