X-RAY DIFFRACTION

Starting Model(s)

Initial Refinement Model(s)
TypeSourceAccession CodeDetails
otherSEE REMARK

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
16.7pH 6.70
Crystal Properties
Matthews coefficientSolvent content
3.1160.13

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 53.23α = 90
b = 118.356β = 93.75
c = 105.592γ = 90
Symmetry
Space GroupP 1 21 1

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100CCDADSC CCDMSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONESRF BEAMLINE ID29ESRFID29

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
12.119.8795.30.072210683352
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
12.082.1772.30.236

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUTSEE REMARK2.119.8768335363494.80.210.2080.252RANDOM42.12
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
-0.25-0.18-0.230.46
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg31.554
r_dihedral_angle_4_deg21.05
r_dihedral_angle_3_deg14.51
r_dihedral_angle_1_deg7.116
r_scangle_it6.797
r_scbond_it5.218
r_mcangle_it3.022
r_mcbond_it2.309
r_angle_refined_deg1.254
r_nbtor_refined0.321
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg31.554
r_dihedral_angle_4_deg21.05
r_dihedral_angle_3_deg14.51
r_dihedral_angle_1_deg7.116
r_scangle_it6.797
r_scbond_it5.218
r_mcangle_it3.022
r_mcbond_it2.309
r_angle_refined_deg1.254
r_nbtor_refined0.321
r_nbd_refined0.299
r_symmetry_hbond_refined0.236
r_xyhbond_nbd_refined0.179
r_symmetry_vdw_refined0.163
r_chiral_restr0.084
r_bond_refined_d0.01
r_gen_planes_refined0.004
r_bond_other_d
r_angle_other_deg
r_gen_planes_other
r_nbd_other
r_nbtor_other
r_xyhbond_nbd_other
r_metal_ion_refined
r_metal_ion_other
r_symmetry_vdw_other
r_symmetry_hbond_other
r_symmetry_metal_ion_refined
r_symmetry_metal_ion_other
r_mcbond_other
r_mcangle_other
r_scbond_other
r_scangle_other
r_long_range_B_refined
r_long_range_B_other
r_rigid_bond_restr
r_sphericity_free
r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms7404
Nucleic Acid Atoms
Solvent Atoms188
Heterogen Atoms

Software

Software
Software NamePurpose
REFMACrefinement
DENZOdata reduction
SCALEPACKdata scaling
PHASERphasing