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14-3-3 Protein Eta (Human) Complexed to Peptide
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 2BQ0 PDB ENTRY 2BQ0
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 5.6 0.1M CITRATE PH 5.6, 20% ISOPROPANOL, 20% PEG4000
Crystal Properties Matthews coefficient Solvent content 3.15 60.66
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 75.731 α = 90 b = 75.36 β = 90 c = 113.529 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARRESEARCH 2005-10-01 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SLS BEAMLINE X10SA SLS X10SA
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.7 38.9 99.8 0.08 12 3.5 18419
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.7 2.85 99.9 0.48 2.4 3.6
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 2BQ0 2.7 62.99 17445 935 99.7 0.224 0.22 0.2289 0.291 0.2989 RANDOM 53.16
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -1.99 -2.19 4.17
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 39.271 r_dihedral_angle_4_deg 19.068 r_dihedral_angle_3_deg 16.339 r_dihedral_angle_1_deg 4.777 r_scangle_it 2.346 r_scbond_it 1.443 r_angle_refined_deg 1.391 r_mcangle_it 0.987 r_angle_other_deg 0.855 r_mcbond_it 0.588
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 39.271 r_dihedral_angle_4_deg 19.068 r_dihedral_angle_3_deg 16.339 r_dihedral_angle_1_deg 4.777 r_scangle_it 2.346 r_scbond_it 1.443 r_angle_refined_deg 1.391 r_mcangle_it 0.987 r_angle_other_deg 0.855 r_mcbond_it 0.588 r_symmetry_hbond_refined 0.232 r_nbd_refined 0.228 r_symmetry_vdw_other 0.228 r_nbtor_refined 0.186 r_nbd_other 0.167 r_symmetry_vdw_refined 0.165 r_xyhbond_nbd_refined 0.164 r_nbtor_other 0.086 r_chiral_restr 0.073 r_bond_refined_d 0.014 r_gen_planes_refined 0.005 r_gen_planes_other 0.002 r_bond_other_d 0.001 r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_mcangle_other r_scbond_other r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3659 Nucleic Acid Atoms Solvent Atoms 3 Heterogen Atoms 10
Software Software Software Name Purpose REFMAC refinement MOSFLM data reduction SCALA data scaling PHASER phasing