☰ Navigation Tabs
Crystal structure of yeast YER010Cp
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 6 18% PEG 8K, 0.1M SODIUM CACODYLATE PH6, 0.1M MAGNESIUM SULPHATE, pH 6.00
Crystal Properties Matthews coefficient Solvent content 2.26 45.25
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 128.193 α = 90 b = 255.073 β = 90 c = 48.173 γ = 90
Symmetry Space Group P 21 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC CCD M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID14-2 ESRF ID14-2
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.7 30 99.3 0.12 12.2 5.49 956280 2
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.7 1.74
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MAD THROUGHOUT 1.7 19.94 165607 8721 100 0.156 0.155 0.1692 0.183 0.1956 RANDOM 13.78
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.24 0.52 -0.28
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.007 r_dihedral_angle_4_deg 15.563 r_dihedral_angle_3_deg 11.081 r_dihedral_angle_1_deg 6.279 r_scangle_it 4.017 r_scbond_it 2.819 r_mcangle_it 1.542 r_angle_refined_deg 1.524 r_mcbond_it 1.234 r_angle_other_deg 0.855
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.007 r_dihedral_angle_4_deg 15.563 r_dihedral_angle_3_deg 11.081 r_dihedral_angle_1_deg 6.279 r_scangle_it 4.017 r_scbond_it 2.819 r_mcangle_it 1.542 r_angle_refined_deg 1.524 r_mcbond_it 1.234 r_angle_other_deg 0.855 r_symmetry_vdw_other 0.245 r_nbd_refined 0.215 r_symmetry_vdw_refined 0.202 r_nbd_other 0.188 r_xyhbond_nbd_refined 0.184 r_nbtor_refined 0.178 r_symmetry_hbond_refined 0.167 r_chiral_restr 0.098 r_nbtor_other 0.084 r_bond_refined_d 0.015 r_gen_planes_refined 0.007 r_bond_other_d 0.001 r_gen_planes_other 0.001 r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_mcangle_other r_scbond_other r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 10703 Nucleic Acid Atoms Solvent Atoms 1669 Heterogen Atoms 52
Software Software Software Name Purpose MOSFLM data reduction SCALA data scaling SHELXD phasing SHARP phasing REFMAC refinement