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Crystal structure of the NADPH-treated monooxygenase domain of MICAL
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 5 pH 5.00
Crystal Properties Matthews coefficient Solvent content 2.44 48
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 75.709 α = 90 b = 89.915 β = 113.82 c = 83.573 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 IMAGE PLATE MAR scanner 345 mm plate M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 ROTATING ANODE RIGAKU MICROMAX-007
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.9 30 98.4 0.17 10.5 6.8 25263 2
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.9 2.99 94.5 0.94 2.5 6.1
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 2.9 30 21557 1159 99.3 0.246 0.243 0.234 0.294 RANDOM 80.51
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -5 -7.37 4.38 -5.33
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 40.149 r_dihedral_angle_3_deg 17.119 r_dihedral_angle_4_deg 12.612 r_dihedral_angle_1_deg 5.2 r_angle_refined_deg 1.015 r_scangle_it 0.527 r_mcangle_it 0.333 r_nbtor_refined 0.298 r_scbond_it 0.297 r_nbd_refined 0.193
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 40.149 r_dihedral_angle_3_deg 17.119 r_dihedral_angle_4_deg 12.612 r_dihedral_angle_1_deg 5.2 r_angle_refined_deg 1.015 r_scangle_it 0.527 r_mcangle_it 0.333 r_nbtor_refined 0.298 r_scbond_it 0.297 r_nbd_refined 0.193 r_mcbond_it 0.185 r_symmetry_hbond_refined 0.162 r_symmetry_vdw_refined 0.151 r_xyhbond_nbd_refined 0.126 r_chiral_restr 0.071 r_bond_refined_d 0.006 r_gen_planes_refined 0.002 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_other r_nbtor_other r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_mcangle_other r_scbond_other r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 7442 Nucleic Acid Atoms Solvent Atoms 40 Heterogen Atoms 108
Software Software Software Name Purpose REFMAC refinement DENZO data reduction SCALEPACK data scaling EPMR phasing