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Human Enteric Adenovirus Serotype 41 Short Fiber Head (pH8)
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 2BZU PDB ENTRY 2BZU
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 8 20% PEG3350, 0.25 M SODIUM DIHYDROGEN PHOSPHATE MONOBASIC, pH 8.00
Crystal Properties Matthews coefficient Solvent content 2.3 47
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 103.73 α = 90 b = 103.73 β = 90 c = 103.73 γ = 90
Symmetry Space Group I 21 3
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC CCD TOROIDAL MIRROR M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID14-2 ESRF ID14-2
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.15 100 97 0.08 12 5.4 351024 1
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.15 1.19 92 0.33 4 5.1
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 2BZU 1.15 30 58983 3183 94.7 0.124 0.124 0.131 0.1463 RANDOM 13.32
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3]
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 40.168 r_dihedral_angle_3_deg 11.11 r_dihedral_angle_1_deg 6.343 r_scangle_it 5.777 r_dihedral_angle_4_deg 5.666 r_scbond_it 3.591 r_mcangle_it 2.863 r_mcbond_it 2.007 r_angle_refined_deg 1.48 r_angle_other_deg 1.18
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 40.168 r_dihedral_angle_3_deg 11.11 r_dihedral_angle_1_deg 6.343 r_scangle_it 5.777 r_dihedral_angle_4_deg 5.666 r_scbond_it 3.591 r_mcangle_it 2.863 r_mcbond_it 2.007 r_angle_refined_deg 1.48 r_angle_other_deg 1.18 r_nbd_refined 0.379 r_nbd_other 0.257 r_symmetry_vdw_other 0.231 r_nbtor_refined 0.21 r_symmetry_vdw_refined 0.195 r_xyhbond_nbd_refined 0.149 r_symmetry_hbond_refined 0.138 r_nbtor_other 0.088 r_chiral_restr 0.086 r_bond_refined_d 0.009 r_gen_planes_refined 0.005 r_gen_planes_other 0.004 r_bond_other_d 0.002 r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_mcangle_other r_scbond_other r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1141 Nucleic Acid Atoms Solvent Atoms 333 Heterogen Atoms
Software Software Software Name Purpose REFMAC refinement XDS data reduction XDS data scaling MOLREP phasing