☰ Navigation Tabs
CRYSTAL STRUCTURE OF THE HUMAN PROTEIN TYROSINE PHOSPHATASE N14 AT 1. 65 A RESOLUTION
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1FPR PDB ENTRY 1FPR
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP SITTING DROP, 20% PEG3350, 0.2 M LI2SO4, 0.1 M BIS TRIS PROPANE PH 6.5, CRYO 20% ETHYLENE GLYCOL
Crystal Properties Matthews coefficient Solvent content 2.4 49.2
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 87.636 α = 90 b = 87.636 β = 90 c = 77.115 γ = 120
Symmetry Space Group P 32 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARRESEARCH MIRRORS 2005-08-02 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SLS BEAMLINE X10SA SLS X10SA
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.65 50 99.5 0.09 15.08 6.73 41374 2
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.65 1.75 99.1 0.48 2.05 4.5
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 1FPR 1.65 77.15 39553 1820 99.5 0.186 0.185 0.1939 0.217 0.2283 RANDOM 21.52
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.36 0.18 0.36 -0.54
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 29.422 r_dihedral_angle_4_deg 17.983 r_dihedral_angle_3_deg 12.085 r_dihedral_angle_1_deg 5.018 r_scangle_it 3.091 r_scbond_it 2.454 r_mcangle_it 1.424 r_angle_refined_deg 1.167 r_mcbond_it 0.893 r_angle_other_deg 0.728
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 29.422 r_dihedral_angle_4_deg 17.983 r_dihedral_angle_3_deg 12.085 r_dihedral_angle_1_deg 5.018 r_scangle_it 3.091 r_scbond_it 2.454 r_mcangle_it 1.424 r_angle_refined_deg 1.167 r_mcbond_it 0.893 r_angle_other_deg 0.728 r_nbd_refined 0.207 r_symmetry_vdw_refined 0.205 r_nbd_other 0.187 r_symmetry_vdw_other 0.185 r_nbtor_refined 0.18 r_xyhbond_nbd_refined 0.144 r_symmetry_hbond_refined 0.116 r_nbtor_other 0.081 r_chiral_restr 0.072 r_bond_refined_d 0.008 r_gen_planes_refined 0.004 r_bond_other_d 0.001 r_gen_planes_other 0.001 r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_mcangle_other r_scbond_other r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2235 Nucleic Acid Atoms Solvent Atoms 244 Heterogen Atoms 18
Software Software Software Name Purpose REFMAC refinement SCALA data scaling PHASER phasing