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Ornithine aminotransferase mutant Y85I
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1OAT PDB ENTRY 1OAT
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 7.9 6-10%PEG6000, 120-160MM NACL, 50MM TRICINE PH7.9, 1MM DTT, pH 7.90
Crystal Properties Matthews coefficient Solvent content 2.78 47
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 115.723 α = 90 b = 115.723 β = 90 c = 186.551 γ = 120
Symmetry Space Group P 32 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 IMAGE PLATE MAR scanner 345 mm plate MIRRORS 2002-09-01 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 ROTATING ANODE RIGAKU
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 3.01 52.7 98.8 0.11 5.96 2.9 28835
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 3.01 3.16 92.9 0.23 3.16 2.76
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 1OAT 3.02 29.88 27299 1465 99 0.208 0.207 0.226 RANDOM 32.75
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -1.15 -0.57 -1.15 1.72
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.213 r_dihedral_angle_3_deg 16.733 r_dihedral_angle_4_deg 14.528 r_dihedral_angle_1_deg 4.835 r_angle_refined_deg 0.989 r_angle_other_deg 0.737 r_scangle_it 0.233 r_symmetry_vdw_other 0.232 r_symmetry_vdw_refined 0.212 r_nbd_refined 0.189
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.213 r_dihedral_angle_3_deg 16.733 r_dihedral_angle_4_deg 14.528 r_dihedral_angle_1_deg 4.835 r_angle_refined_deg 0.989 r_angle_other_deg 0.737 r_scangle_it 0.233 r_symmetry_vdw_other 0.232 r_symmetry_vdw_refined 0.212 r_nbd_refined 0.189 r_nbd_other 0.173 r_nbtor_refined 0.172 r_scbond_it 0.149 r_xyhbond_nbd_refined 0.099 r_symmetry_hbond_refined 0.089 r_nbtor_other 0.083 r_mcangle_it 0.08 r_mcbond_it 0.058 r_chiral_restr 0.054 r_bond_refined_d 0.006 r_gen_planes_refined 0.002 r_bond_other_d 0.001 r_gen_planes_other 0.001 r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_mcangle_other r_scbond_other r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 9471 Nucleic Acid Atoms Solvent Atoms 47 Heterogen Atoms 45
Software Software Software Name Purpose REFMAC refinement MOSFLM data reduction SCALA data scaling