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Crystal structure of B.subtilis Anti-TRAP protein, an antagonist of TRAP-RNA interactions
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 6.5 CONDITIONS: 21-23 % (W/V) POLY(ETHYLENE) GLYCOL 5000 MONMETHYL ETHER; 0.1 M SODIUM CACODYLATE PH 6.5; 50 MM MAGNESIUM ACETATE CRYOSOLUTION: 16 % GLYCEROL (V/V) WITH HIGHER CONCENTRATION OF POLY(ETHYLENE) GLYCOL
Crystal Properties Matthews coefficient Solvent content 2.4 48
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 51.552 α = 113.99 b = 60.125 β = 101.37 c = 60.348 γ = 100.5
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 120 CCD ADSC CCD 2003-06-27 M MAD
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SRS BEAMLINE PX9.6 0.87, 1.28258 SRS PX9.6
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.8 20 93.4 0.11 5.7 1.9 14370
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.8 2.95 83 0.18 2.4 1.8
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MAD THROUGHOUT 2.8 20 13637 724 94.2 0.197 0.192 0.2133 0.296 0.3027 RANDOM 75.31
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 2.28 -0.07 0.48 0.68 0.59 -2.31
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 42.53 r_dihedral_angle_4_deg 20.978 r_dihedral_angle_3_deg 20.124 r_scangle_it 6.986 r_dihedral_angle_1_deg 5.14 r_scbond_it 4.893 r_mcangle_it 1.752 r_angle_refined_deg 1.369 r_mcbond_it 1.043 r_nbtor_refined 0.31
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 42.53 r_dihedral_angle_4_deg 20.978 r_dihedral_angle_3_deg 20.124 r_scangle_it 6.986 r_dihedral_angle_1_deg 5.14 r_scbond_it 4.893 r_mcangle_it 1.752 r_angle_refined_deg 1.369 r_mcbond_it 1.043 r_nbtor_refined 0.31 r_symmetry_vdw_refined 0.259 r_nbd_refined 0.232 r_xyhbond_nbd_refined 0.149 r_chiral_restr 0.09 r_symmetry_hbond_refined 0.062 r_bond_refined_d 0.01 r_gen_planes_refined 0.003 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_other r_nbtor_other r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_mcangle_other r_scbond_other r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 4692 Nucleic Acid Atoms Solvent Atoms 130 Heterogen Atoms 12
Software Software Software Name Purpose MOSFLM data reduction SCALA data scaling SHELXD phasing SHARP phasing REFMAC refinement