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Murine angiogenin, sulphate complex
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1AGI PDB ENTRY 1AGI
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 4.5 25% PEG 4000, 0.2M (NH4)2SO4, UNBUFFERED, pH 4.50
Crystal Properties Matthews coefficient Solvent content 2.3 46
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 63.762 α = 90 b = 56.266 β = 90 c = 35.343 γ = 90
Symmetry Space Group P 21 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 293 CCD ADSC CCD 1999-09-20 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SRS BEAMLINE PX9.6 SRS PX9.6
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.5 40 96.3 0.07 17 6.4 20302
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.5 1.55 83.4 0.22 5
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 1AGI 1.5 42.18 19236 1039 96.4 0.179 0.178 0.1747 0.191 0.1887 RANDOM 19.01
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.25 0.13 -0.38
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 29.17 r_dihedral_angle_4_deg 13.661 r_dihedral_angle_3_deg 11.852 r_dihedral_angle_1_deg 5.801 r_scangle_it 3.863 r_scbond_it 3.004 r_mcangle_it 2.682 r_mcbond_it 1.806 r_angle_refined_deg 1.616 r_nbtor_refined 0.306
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 29.17 r_dihedral_angle_4_deg 13.661 r_dihedral_angle_3_deg 11.852 r_dihedral_angle_1_deg 5.801 r_scangle_it 3.863 r_scbond_it 3.004 r_mcangle_it 2.682 r_mcbond_it 1.806 r_angle_refined_deg 1.616 r_nbtor_refined 0.306 r_symmetry_hbond_refined 0.217 r_nbd_refined 0.201 r_symmetry_vdw_refined 0.13 r_xyhbond_nbd_refined 0.115 r_chiral_restr 0.104 r_bond_refined_d 0.015 r_gen_planes_refined 0.008 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_other r_nbtor_other r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_mcangle_other r_scbond_other r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 873 Nucleic Acid Atoms Solvent Atoms 108 Heterogen Atoms 10
Software Software Software Name Purpose REFMAC refinement DENZO data reduction SCALEPACK data scaling AMoRE phasing