X-RAY DIFFRACTION

Starting Model(s)

Initial Refinement Model(s)
TypeSourceAccession CodeDetails
experimental modelPDB 1AGRPDB ENTRIES 1AGR AND 1FQJ
experimental modelPDB 1FQJPDB ENTRIES 1AGR AND 1FQJ

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
184.1M SODIUM FORMATE, 3% GLYCEROL. 1:1 MIXTURE WITH RGS1 PROTEIN AT 23MG/ML., pH 8.00
Crystal Properties
Matthews coefficientSolvent content
2.856

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 40.738α = 78.43
b = 43.202β = 85.3
c = 58.651γ = 69.74
Symmetry
Space GroupP 1

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100IMAGE PLATERIGAKU RAXIS HTCOSMIC MIRRORS2005-04-26MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1ROTATING ANODERIGAKU FR-E

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
1232.0390.60.0516.33.122497
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
122.1165.70.342.72.9

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUTPDB ENTRIES 1AGR AND 1FQJ257.4521324117090.60.1910.1880.241RANDOM36.81
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
0.18-0.410.410.260.05-0.25
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg37.563
r_dihedral_angle_4_deg22.882
r_dihedral_angle_3_deg15.697
r_dihedral_angle_1_deg5.619
r_scangle_it3.368
r_scbond_it2.375
r_angle_refined_deg1.534
r_mcangle_it1.435
r_mcbond_it1.057
r_angle_other_deg0.899
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg37.563
r_dihedral_angle_4_deg22.882
r_dihedral_angle_3_deg15.697
r_dihedral_angle_1_deg5.619
r_scangle_it3.368
r_scbond_it2.375
r_angle_refined_deg1.534
r_mcangle_it1.435
r_mcbond_it1.057
r_angle_other_deg0.899
r_symmetry_vdw_other0.246
r_symmetry_vdw_refined0.219
r_nbd_refined0.207
r_xyhbond_nbd_refined0.195
r_nbtor_refined0.187
r_nbd_other0.166
r_symmetry_hbond_refined0.108
r_chiral_restr0.09
r_nbtor_other0.09
r_bond_refined_d0.017
r_gen_planes_refined0.006
r_bond_other_d0.003
r_gen_planes_other0.001
r_xyhbond_nbd_other
r_metal_ion_refined
r_metal_ion_other
r_symmetry_hbond_other
r_symmetry_metal_ion_refined
r_symmetry_metal_ion_other
r_mcbond_other
r_mcangle_other
r_scbond_other
r_scangle_other
r_long_range_B_refined
r_long_range_B_other
r_rigid_bond_restr
r_sphericity_free
r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms2096
Nucleic Acid Atoms
Solvent Atoms155
Heterogen Atoms

Software

Software
Software NamePurpose
REFMACrefinement
MOSFLMdata reduction
SCALAdata scaling
PHASERphasing