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Structure of Lactococcal Bacteriophage p2 Receptor Binding Protein
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 6.5 A VOLUME OF 1 MICROL OF PROTEIN 6 TO 9 MG/ML) WAS MIXED WITH 1 MICROL OF RESERVOIR SOLUTION CONTAINING 0.85-1.1 M AMMONIUM SULPHATE IN 0.1 M MES PH 6.5. CRYSTALS WERE IMPROVED BY MICROSEEDING.
Crystal Properties Matthews coefficient Solvent content 2.95 61.36
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 76.108 α = 90 b = 96.25 β = 90 c = 149.491 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC CCD M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID14-4 ESRF ID14-4
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.3 20 99 0.09 6.7 3.5 48171 1
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.3 2.36 0.33 2
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT 2.3 20 48171 1256 100 0.221 0.22 0.2051 0.252 RANDOM 23.89
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.1 -0.71 0.8
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_1_deg 6.897 r_scangle_it 2.294 r_scbond_it 1.369 r_angle_refined_deg 1.148 r_mcangle_it 0.849 r_mcbond_it 0.42 r_symmetry_vdw_refined 0.204 r_nbd_refined 0.189 r_xyhbond_nbd_refined 0.106 r_chiral_restr 0.078
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_1_deg 6.897 r_scangle_it 2.294 r_scbond_it 1.369 r_angle_refined_deg 1.148 r_mcangle_it 0.849 r_mcbond_it 0.42 r_symmetry_vdw_refined 0.204 r_nbd_refined 0.189 r_xyhbond_nbd_refined 0.106 r_chiral_restr 0.078 r_symmetry_hbond_refined 0.068 r_bond_refined_d 0.009 r_gen_planes_refined 0.004 r_bond_other_d r_angle_other_deg r_dihedral_angle_2_deg r_dihedral_angle_3_deg r_dihedral_angle_4_deg r_gen_planes_other r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_mcangle_other r_scbond_other r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 5820 Nucleic Acid Atoms Solvent Atoms 215 Heterogen Atoms
Software Software Software Name Purpose REFMAC refinement MOSFLM data reduction SCALA data scaling SOLVE/RESOLVE phasing