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Crystal structure of the native monooxygenase domain of MICAL at 1.45 A resolution
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 0.1 M NA ACETATE, PH 4.6 0.2 AMMONIUM SULFATE 30% PEG 2000 MONOMETHYL ETHER
Crystal Properties Matthews coefficient Solvent content 2.36 48
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 76.588 α = 90 b = 89.548 β = 114.35 c = 83.458 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC CCD M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID23-1 ESRF ID23-1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.45 30 88.3 0.06 11.3 3.1 160458 1.4
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.45 1.55 54.4 0.68 1.4 1.4
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT 1.45 76.03 154050 6406 88.3 0.181 0.18 0.2302 0.222 RANDOM 22.76
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -1.84 -0.73 1.81 -0.57
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.484 r_dihedral_angle_4_deg 17.647 r_dihedral_angle_3_deg 13.357 r_dihedral_angle_1_deg 5.695 r_scangle_it 2.766 r_scbond_it 1.796 r_angle_refined_deg 1.333 r_mcangle_it 1.265 r_mcbond_it 0.843 r_nbtor_refined 0.308
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.484 r_dihedral_angle_4_deg 17.647 r_dihedral_angle_3_deg 13.357 r_dihedral_angle_1_deg 5.695 r_scangle_it 2.766 r_scbond_it 1.796 r_angle_refined_deg 1.333 r_mcangle_it 1.265 r_mcbond_it 0.843 r_nbtor_refined 0.308 r_symmetry_vdw_refined 0.267 r_symmetry_hbond_refined 0.209 r_nbd_refined 0.201 r_xyhbond_nbd_refined 0.158 r_chiral_restr 0.086 r_bond_refined_d 0.012 r_gen_planes_refined 0.006 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_other r_nbtor_other r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_mcangle_other r_scbond_other r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 7482 Nucleic Acid Atoms Solvent Atoms 1583 Heterogen Atoms 124
Software Software Software Name Purpose DENZO data reduction SCALEPACK data scaling SHELXD phasing SHARP phasing REFMAC refinement