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Crystal structure of the yeast CPR triple mutant: D74G, Y75F, K78A.
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 2BF4 PDB ENTRY 2BF4
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 5 295 1.6 M AMMONIUM SULFATE 100 MM SODIUM CITRATE, PH 5.0 5 MM NICKEL CHLORIDE 1 MM FMN 1 MM FAD 1 MM NADP, T=22 C.
Crystal Properties Matthews coefficient Solvent content 2.85 56
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 78.357 α = 90 b = 86.596 β = 90 c = 259.717 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 110 CCD MARRESEARCH SAGITTAL FOCUSING CRYSTAL AND VERTICALLY FOCUSING MIRROR 2005-02-17 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 22-ID APS 22-ID
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.9 50 92.6 0.08 16.5 5.4 37243 136.3
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.9 3 78 0.36 3.8 4.8
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 2BF4 2.9 39.18 35007 3504 87.2 0.205 0.205 0.205 0.268 0.2665 RANDOM 56.1
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -2.02 25.63 -23.61
RMS Deviations Key Refinement Restraint Deviation c_dihedral_angle_d 23 c_scangle_it 2.81 c_mcangle_it 2.14 c_scbond_it 1.75 c_angle_deg 1.3 c_mcbond_it 1.24 c_improper_angle_d 0.9 c_bond_d 0.008 c_bond_d_na c_bond_d_prot
RMS Deviations Key Refinement Restraint Deviation c_dihedral_angle_d 23 c_scangle_it 2.81 c_mcangle_it 2.14 c_scbond_it 1.75 c_angle_deg 1.3 c_mcbond_it 1.24 c_improper_angle_d 0.9 c_bond_d 0.008 c_bond_d_na c_bond_d_prot c_angle_d c_angle_d_na c_angle_d_prot c_angle_deg_na c_angle_deg_prot c_dihedral_angle_d_na c_dihedral_angle_d_prot c_improper_angle_d_na c_improper_angle_d_prot
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 10080 Nucleic Acid Atoms Solvent Atoms 185 Heterogen Atoms 263
Software Software Software Name Purpose CNS refinement HKL-2000 data reduction SCALEPACK data scaling CNS phasing