X-RAY DIFFRACTION

Starting Model(s)

Initial Refinement Model(s)
TypeSourceAccession CodeDetails
experimental modelPDB 1OE1PDB ENTRY 1OE1

Crystallization

Crystal Properties
Matthews coefficientSolvent content
2.7655.02

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 90.605α = 90
b = 90.605β = 90
c = 291.439γ = 120
Symmetry
Space GroupH 3

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100CCDADSC CCDMSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONSRS BEAMLINE PX9.6SRSPX9.6

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
11.97097.40.08183.269754
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
11.91.9791.43.2

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUTPDB ENTRY 1OE11.97065115345197.50.1610.1590.196RANDOM22.32
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
-0.01
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_1_deg7.17
r_scangle_it3.608
r_scbond_it2.312
r_angle_refined_deg1.537
r_mcangle_it1.482
r_angle_other_deg0.897
r_mcbond_it0.854
r_symmetry_hbond_refined0.395
r_symmetry_vdw_other0.306
r_nbd_other0.238
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_1_deg7.17
r_scangle_it3.608
r_scbond_it2.312
r_angle_refined_deg1.537
r_mcangle_it1.482
r_angle_other_deg0.897
r_mcbond_it0.854
r_symmetry_hbond_refined0.395
r_symmetry_vdw_other0.306
r_nbd_other0.238
r_nbd_refined0.213
r_xyhbond_nbd_refined0.207
r_symmetry_vdw_refined0.183
r_chiral_restr0.104
r_nbtor_other0.079
r_bond_refined_d0.017
r_gen_planes_refined0.007
r_gen_planes_other0.005
r_bond_other_d0.002
r_dihedral_angle_2_deg
r_dihedral_angle_3_deg
r_dihedral_angle_4_deg
r_nbtor_refined
r_xyhbond_nbd_other
r_metal_ion_refined
r_metal_ion_other
r_symmetry_hbond_other
r_symmetry_metal_ion_refined
r_symmetry_metal_ion_other
r_mcbond_other
r_mcangle_other
r_scbond_other
r_scangle_other
r_long_range_B_refined
r_long_range_B_other
r_rigid_bond_restr
r_sphericity_free
r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms5086
Nucleic Acid Atoms
Solvent Atoms791
Heterogen Atoms40

Software

Software
Software NamePurpose
REFMACrefinement
HKL-2000data reduction
SCALEPACKdata scaling
MOLREPphasing