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crystal Structure of pseudomonas aeruginosa lectin (PA-IIL) complexed with methyl-B-D-Arabinopyranoside
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1UZV PDB ENTRY 1UZV
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 8.5 TRIS HCL 0.1M, PH8.5, 1.75 M AMMONIUM SULFATE, pH 8.50
Crystal Properties Matthews coefficient Solvent content 1.74 29
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 50.636 α = 90 b = 80.168 β = 109.92 c = 52.517 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC CCD TOROIDAL MIRROR 2002-06-10 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID14-2 ESRF ID14-2
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.8 29.6 97.9 0.07 7.5 3.73 35769
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.8 1.9 89 0.19 3.64 3.45
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 1UZV 1.8 49.39 34653 1116 97.7 0.137 0.136 0.1351 0.172 0.172 RANDOM 11.43
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.05 0.01 -0.03 0.1
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 43.637 r_dihedral_angle_4_deg 19.172 r_dihedral_angle_3_deg 11.568 r_dihedral_angle_1_deg 6.521 r_scangle_it 2.832 r_scbond_it 1.751 r_angle_refined_deg 1.32 r_mcangle_it 1.051 r_mcbond_it 0.621 r_nbtor_refined 0.301
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 43.637 r_dihedral_angle_4_deg 19.172 r_dihedral_angle_3_deg 11.568 r_dihedral_angle_1_deg 6.521 r_scangle_it 2.832 r_scbond_it 1.751 r_angle_refined_deg 1.32 r_mcangle_it 1.051 r_mcbond_it 0.621 r_nbtor_refined 0.301 r_nbd_refined 0.222 r_symmetry_vdw_refined 0.193 r_symmetry_hbond_refined 0.183 r_xyhbond_nbd_refined 0.154 r_chiral_restr 0.086 r_bond_refined_d 0.011 r_gen_planes_refined 0.005 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_other r_nbtor_other r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_mcangle_other r_scbond_other r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3308 Nucleic Acid Atoms Solvent Atoms 612 Heterogen Atoms 57
Software Software Software Name Purpose REFMAC refinement DENZO data reduction SCALA data scaling AMoRE phasing