X-RAY DIFFRACTION

Starting Model(s)

Initial Refinement Model(s)
TypeSourceAccession CodeDetails
experimental modelPDB 2BO6PDB ENTRY 2BO6

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
110 MM NACL, 0.1 M SODIUM ACETATE TRIHYDRATE, PH 4.6, 15% (V/V) MPD
Crystal Properties
Matthews coefficientSolvent content
4.270.7

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 405.094α = 90
b = 161.43β = 90
c = 108.708γ = 90
Symmetry
Space GroupP 21 21 2

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100CCDADSC CCDMSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONESRF BEAMLINE ID29ESRFID29

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
12.840980.114.55.31752572
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
12.82.95990.4844.8

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUTPDB ENTRY 2BO62.874.12162631868797.40.1960.1950.216RANDOM58.27
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
0.91-0.38-0.54
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg33.076
r_dihedral_angle_3_deg19.53
r_dihedral_angle_4_deg19.419
r_dihedral_angle_1_deg6.436
r_scangle_it2.453
r_angle_refined_deg1.914
r_scbond_it1.564
r_mcangle_it1.016
r_mcbond_it0.589
r_symmetry_vdw_refined0.476
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg33.076
r_dihedral_angle_3_deg19.53
r_dihedral_angle_4_deg19.419
r_dihedral_angle_1_deg6.436
r_scangle_it2.453
r_angle_refined_deg1.914
r_scbond_it1.564
r_mcangle_it1.016
r_mcbond_it0.589
r_symmetry_vdw_refined0.476
r_symmetry_hbond_refined0.376
r_nbtor_refined0.328
r_nbd_refined0.241
r_xyhbond_nbd_refined0.171
r_chiral_restr0.143
r_bond_refined_d0.023
r_gen_planes_refined0.007
r_bond_other_d
r_angle_other_deg
r_gen_planes_other
r_nbd_other
r_nbtor_other
r_xyhbond_nbd_other
r_metal_ion_refined
r_metal_ion_other
r_symmetry_vdw_other
r_symmetry_hbond_other
r_symmetry_metal_ion_refined
r_symmetry_metal_ion_other
r_mcbond_other
r_mcangle_other
r_scbond_other
r_scangle_other
r_long_range_B_refined
r_long_range_B_other
r_rigid_bond_restr
r_sphericity_free
r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms31380
Nucleic Acid Atoms
Solvent Atoms308
Heterogen Atoms410

Software

Software
Software NamePurpose
REFMACrefinement
HKLdata reduction
HKLdata scaling
MOLREPphasing