☰ Navigation Tabs
Structure of the Type II cohesin from Clostridium thermocellum SdbA
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 2MM CACL2, 5% ISOPROPANOL AND 2M AMONNIUM SULPHATE. CRYO-PROTECTED WITH 30% GLYCEROL
Crystal Properties Matthews coefficient Solvent content 2.17 42.96
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 79.677 α = 90 b = 79.677 β = 90 c = 101.745 γ = 120
Symmetry Space Group P 63 2 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC CCD TOROIDAL MIRROR 2005-02-12 M MAD
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID14-2 ESRF ID14-2
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.8 20 100 0.06 73.5 35.2 18256
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.8 1.86 100 0.4 15 35.9
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION COMBINED MULTIPLE WAVELENGTH AND MULTIPLE ISOMORPHOUS REPLACEMENT THROUGHOUT 1.8 69.01 17299 928 99.7 0.192 0.189 0.1878 0.26 0.2611 RANDOM 22.79
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.71 0.35 0.71 -1.06
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 42.092 r_dihedral_angle_4_deg 24.534 r_dihedral_angle_3_deg 13.859 r_dihedral_angle_1_deg 6.097 r_scangle_it 3.493 r_scbond_it 2.447 r_mcangle_it 1.64 r_angle_refined_deg 1.529 r_mcbond_it 1.033 r_nbtor_refined 0.315
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 42.092 r_dihedral_angle_4_deg 24.534 r_dihedral_angle_3_deg 13.859 r_dihedral_angle_1_deg 6.097 r_scangle_it 3.493 r_scbond_it 2.447 r_mcangle_it 1.64 r_angle_refined_deg 1.529 r_mcbond_it 1.033 r_nbtor_refined 0.315 r_symmetry_vdw_refined 0.211 r_nbd_refined 0.205 r_xyhbond_nbd_refined 0.153 r_symmetry_hbond_refined 0.127 r_chiral_restr 0.119 r_bond_refined_d 0.015 r_gen_planes_refined 0.006 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_other r_nbtor_other r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_mcangle_other r_scbond_other r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1229 Nucleic Acid Atoms Solvent Atoms 194 Heterogen Atoms 16
Software Software Software Name Purpose DENZO data reduction SCALEPACK data scaling SHARP phasing DM phasing REFMAC refinement