2BM1

Ribosomal elongation factor G (EF-G) Fusidic acid resistant mutant G16V


X-RAY DIFFRACTION

Starting Model(s)

Initial Refinement Model(s)
TypeSourceAccession CodeDetails
experimental modelPDB 2BM0PDB ENTRY 2BM0

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
17.317 % PEG8000 100 MM HEPES 46 MM TRIS-HCL PH 7.3 10 MM MAGNESIUM CHLORIDE
Crystal Properties
Matthews coefficientSolvent content
2.651.5

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 76.3α = 90
b = 89.7β = 90
c = 114.9γ = 90
Symmetry
Space GroupP 21 21 21

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100CCDADSC CCD2004-07-23MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONESRF BEAMLINE ID14-1ESRFID14-1

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
12.62898.20.06148.8241493
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
12.62.797.20.43.28.2

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Cut-off Sigma (F)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUTPDB ENTRY 2BM02.62832325598.20.220.220.297RANDOM60.99
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_1_deg8.5
r_scangle_it2.924
r_scbond_it1.645
r_angle_refined_deg1.62
r_mcangle_it1.506
r_angle_other_deg0.931
r_mcbond_it0.819
r_symmetry_vdw_other0.279
r_symmetry_hbond_refined0.234
r_nbd_other0.217
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_1_deg8.5
r_scangle_it2.924
r_scbond_it1.645
r_angle_refined_deg1.62
r_mcangle_it1.506
r_angle_other_deg0.931
r_mcbond_it0.819
r_symmetry_vdw_other0.279
r_symmetry_hbond_refined0.234
r_nbd_other0.217
r_nbd_refined0.215
r_xyhbond_nbd_refined0.194
r_nbtor_refined0.18
r_symmetry_vdw_refined0.115
r_chiral_restr0.093
r_nbtor_other0.09
r_bond_refined_d0.016
r_gen_planes_refined0.005
r_bond_other_d0.002
r_gen_planes_other0.002
r_dihedral_angle_2_deg
r_dihedral_angle_3_deg
r_dihedral_angle_4_deg
r_xyhbond_nbd_other
r_metal_ion_refined
r_metal_ion_other
r_symmetry_hbond_other
r_symmetry_metal_ion_refined
r_symmetry_metal_ion_other
r_mcbond_other
r_mcangle_other
r_scbond_other
r_scangle_other
r_long_range_B_refined
r_long_range_B_other
r_rigid_bond_restr
r_sphericity_free
r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms5167
Nucleic Acid Atoms
Solvent Atoms62
Heterogen Atoms29

Software

Software
Software NamePurpose
REFMACrefinement
XDSdata reduction
SCALAdata scaling
MOLREPphasing