☰ Navigation Tabs
Apo-structure of the C-terminal decarboxylase domain of ArnA
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 5.2 3.2 M NACL, 0.1 M BIS-TRIS PH 5.2
Crystal Properties Matthews coefficient Solvent content 3.5 64.3
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 149.438 α = 90 b = 149.438 β = 90 c = 149.438 γ = 90
Symmetry Space Group P 41 3 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC CCD TOROIDAL MIRROR 2003-11-19 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID14-2 ESRF ID14-2
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.3 87.7 97.8 0.07 7.8 16.3 25160 3
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.3 2.42 97.8 0.37 2.1 11.4
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MAD THROUGHOUT 2.3 87.7 23801 1275 96.8 0.188 0.186 0.1956 0.23 RANDOM 39.88
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3]
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.94 r_dihedral_angle_4_deg 18.901 r_dihedral_angle_3_deg 15.603 r_dihedral_angle_1_deg 6.509 r_scangle_it 3.594 r_scbond_it 2.449 r_angle_refined_deg 1.633 r_mcangle_it 1.527 r_mcbond_it 1.297 r_angle_other_deg 0.899
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.94 r_dihedral_angle_4_deg 18.901 r_dihedral_angle_3_deg 15.603 r_dihedral_angle_1_deg 6.509 r_scangle_it 3.594 r_scbond_it 2.449 r_angle_refined_deg 1.633 r_mcangle_it 1.527 r_mcbond_it 1.297 r_angle_other_deg 0.899 r_symmetry_hbond_refined 0.253 r_symmetry_vdw_other 0.234 r_nbd_refined 0.2 r_nbd_other 0.196 r_nbtor_refined 0.182 r_xyhbond_nbd_refined 0.154 r_symmetry_vdw_refined 0.131 r_chiral_restr 0.099 r_nbtor_other 0.09 r_bond_refined_d 0.019 r_gen_planes_refined 0.007 r_bond_other_d 0.001 r_gen_planes_other 0.001 r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_mcangle_other r_scbond_other r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2705 Nucleic Acid Atoms Solvent Atoms 94 Heterogen Atoms
Software Software Software Name Purpose REFMAC refinement MOSFLM data reduction SCALA data scaling SOLVE phasing