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The membrane rotor of the V-type ATPase from Enterococcus hirae
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 8 32% PEG 400, 220MM NA CITRATE, 0.32MM DODECYLMALTOSIDE, 1.2MM UNDECYLMALTOSIDE, pH 8.00
Crystal Properties Matthews coefficient Solvent content 4.25 70.84
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 120.136 α = 90 b = 125.604 β = 90 c = 210.866 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC CCD 2003-11-23 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID29 ESRF ID29
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.1 61.3 99.4 0.09 9.1 3.7 184567
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.1 2.21 97.5 0.54 1.8 2.9
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MIRAS THROUGHOUT 2.1 61 178986 5580 99.3 0.191 0.19 0.2013 0.2 RANDOM 33.82
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -2.93 2.07 0.86
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_1_deg 4.114 r_scangle_it 2.703 r_scbond_it 1.657 r_mcangle_it 1.455 r_angle_refined_deg 0.955 r_mcbond_it 0.832 r_nbd_refined 0.181 r_symmetry_vdw_refined 0.125 r_symmetry_hbond_refined 0.107 r_xyhbond_nbd_refined 0.106
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_1_deg 4.114 r_scangle_it 2.703 r_scbond_it 1.657 r_mcangle_it 1.455 r_angle_refined_deg 0.955 r_mcbond_it 0.832 r_nbd_refined 0.181 r_symmetry_vdw_refined 0.125 r_symmetry_hbond_refined 0.107 r_xyhbond_nbd_refined 0.106 r_chiral_restr 0.068 r_bond_refined_d 0.008 r_gen_planes_refined 0.004 r_bond_other_d r_angle_other_deg r_dihedral_angle_2_deg r_dihedral_angle_3_deg r_dihedral_angle_4_deg r_gen_planes_other r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_mcangle_other r_scbond_other r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 11280 Nucleic Acid Atoms Solvent Atoms 348 Heterogen Atoms 1478
Software Software Software Name Purpose MOSFLM data reduction SCALA data scaling SHARP phasing SHELXD phasing REFMAC refinement