2BK3

Human Monoamine Oxidase B in complex with Farnesol


X-RAY DIFFRACTION

Starting Model(s)

Initial Refinement Model(s)
TypeSourceAccession CodeDetails
experimental modelPDB 1OJ9PDB ENTRY 1OJ9

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
16.2pH 6.20
Crystal Properties
Matthews coefficientSolvent content
2.7250

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 132.634α = 90
b = 222.096β = 90
c = 86.961γ = 90
Symmetry
Space GroupC 2 2 2

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100CCDADSC CCDMSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONESRF BEAMLINE ID14-1ESRFID14-1

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
11.815990.138.42.7116561
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
11.81.9990.531.12.7

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUTPDB ENTRY 1OJ91.815113437286998.20.2260.2250.249RANDOM41.96
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
1.85-0.68-1.17
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_1_deg5.636
r_scangle_it2.928
r_scbond_it1.736
r_angle_refined_deg1.153
r_mcangle_it1.006
r_mcbond_it0.5
r_symmetry_hbond_refined0.399
r_symmetry_vdw_refined0.261
r_nbd_refined0.202
r_xyhbond_nbd_refined0.107
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_1_deg5.636
r_scangle_it2.928
r_scbond_it1.736
r_angle_refined_deg1.153
r_mcangle_it1.006
r_mcbond_it0.5
r_symmetry_hbond_refined0.399
r_symmetry_vdw_refined0.261
r_nbd_refined0.202
r_xyhbond_nbd_refined0.107
r_chiral_restr0.078
r_bond_refined_d0.01
r_gen_planes_refined0.004
r_bond_other_d
r_angle_other_deg
r_dihedral_angle_2_deg
r_dihedral_angle_3_deg
r_dihedral_angle_4_deg
r_gen_planes_other
r_nbd_other
r_nbtor_refined
r_nbtor_other
r_xyhbond_nbd_other
r_metal_ion_refined
r_metal_ion_other
r_symmetry_vdw_other
r_symmetry_hbond_other
r_symmetry_metal_ion_refined
r_symmetry_metal_ion_other
r_mcbond_other
r_mcangle_other
r_scbond_other
r_scangle_other
r_long_range_B_refined
r_long_range_B_other
r_rigid_bond_restr
r_sphericity_free
r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms7911
Nucleic Acid Atoms
Solvent Atoms384
Heterogen Atoms138

Software

Software
Software NamePurpose
REFMACrefinement
MOSFLMdata reduction
SCALAdata scaling