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High Resolution Structure of myo-Inositol Monophosphatase, The Target of Lithium Therapy
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 2HHM PDB ENTRY 2HHM
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 8 ROOM TEMP, VAPOUR DIFFUSION. HANGING DROPS FROM MIXING EQUAL VOLUMES (2 MICRO LITRES) PROTEIN (CONCENTRATION 20 MG/ML BOVINE IMPASE IN 20 MM TRIS.HCL PH 7.5 CONTAINING 20 MM MGCL2) WITH RESERVOIR SOLUTION (0.1 M SODIUM ACETATE, 0.1 M SODIUM HEPES PH 8.5 AND 15% PEG 4000
Crystal Properties Matthews coefficient Solvent content 2.3 46
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 47.23 α = 67.22 b = 55.15 β = 69.65 c = 60.88 γ = 85.14
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC CCD 2000-10-01 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID14-4 ESRF ID14-4
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.4 27.1 84.7 0.1 7.7 2.2 89508
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.4 1.48 41.8 0.11 7.7 2.2
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 2HHM 1.24 10 93951 4685 84.7 0.153 0.1492 0.191 RANDOM
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3]
Coordinate Error Structure Solution Method Refinement High Resolution Refinement Low Resolution 8 4127 4510
RMS Deviations Key Refinement Restraint Deviation s_non_zero_chiral_vol 0.059 s_zero_chiral_vol 0.054 s_anti_bump_dis_restr 0.035 s_angle_d 0.028 s_from_restr_planes 0.0272 s_bond_d 0.01 s_similar_dist s_rigid_bond_adp_cmpnt s_similar_adp_cmpnt s_approx_iso_adps
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 4164 Nucleic Acid Atoms Solvent Atoms 518 Heterogen Atoms 6
Software Software Software Name Purpose SHELXL-97 refinement MOSFLM data reduction SCALA data scaling AMoRE phasing