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Crystal structure of the Yersinia enterocolitica type III secretion chaperone SycT
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 7 1.2 M DL-MALIC ACID, PH 7.0 100MM BIS-TRIS PROPANE, PH 7.0
Crystal Properties Matthews coefficient Solvent content 1.34 46
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 91.17 α = 90 b = 45.834 β = 105.29 c = 34.453 γ = 90
Symmetry Space Group C 1 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARRESEARCH MIRROR 2004-03-14 M MAD
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON MPG/DESY, HAMBURG BEAMLINE BW6 1.0723, 1.0719, 0.98 MPG/DESY, HAMBURG BW6
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.5 99 97.4 0.03 36.5 5.5 99007 2
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.51 2.54 88.9 0.13 6
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MAD THROUGHOUT 2.6 15 3790 432 100 0.245 0.244 0.2657 0.259 0.2672 RANDOM 44.45
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -5.01 -1.23 10.16 -5.79
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 45.897 r_dihedral_angle_4_deg 29.771 r_dihedral_angle_3_deg 18.052 r_scangle_it 6.413 r_scbond_it 4.674 r_angle_other_deg 3.592 r_mcangle_it 3.048 r_mcbond_it 2.505 r_angle_refined_deg 1.256 r_dihedral_angle_1_deg 1.17
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 45.897 r_dihedral_angle_4_deg 29.771 r_dihedral_angle_3_deg 18.052 r_scangle_it 6.413 r_scbond_it 4.674 r_angle_other_deg 3.592 r_mcangle_it 3.048 r_mcbond_it 2.505 r_angle_refined_deg 1.256 r_dihedral_angle_1_deg 1.17 r_mcbond_other 0.472 r_symmetry_vdw_refined 0.345 r_nbd_other 0.31 r_symmetry_vdw_other 0.298 r_nbd_refined 0.274 r_nbtor_refined 0.188 r_xyhbond_nbd_refined 0.166 r_nbtor_other 0.12 r_chiral_restr 0.096 r_symmetry_hbond_refined 0.035 r_bond_refined_d 0.007 r_gen_planes_other 0.005 r_gen_planes_refined 0.004 r_bond_other_d r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcangle_other r_scbond_other r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 909 Nucleic Acid Atoms Solvent Atoms 22 Heterogen Atoms 1
Software Software Software Name Purpose REFMAC refinement DENZO data reduction SCALEPACK data scaling SHELX phasing