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Structure-based design of Protein Tyrosine Phosphatase-1B Inhibitors
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 6.5 pH 6.50
Crystal Properties Matthews coefficient Solvent content 3.27 62.13
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 88.908 α = 90 b = 88.908 β = 90 c = 104.548 γ = 120
Symmetry Space Group P 31 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 2002-08-19 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON EMBL/DESY, HAMBURG BEAMLINE X13 EMBL/DESY, HAMBURG X13
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.4 27.42 98.6 0.06 11.2 2.89 10524 1
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.4 2.53 96.3 0.17 4.49 2.79
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 2.4 29.11 17876 963 98.4 0.166 0.164 0.1775 0.2 0.2084 RANDOM 23.17
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.14 0.07 0.14 -0.21
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_1_deg 5.91 r_scangle_it 3.204 r_scbond_it 1.88 r_angle_refined_deg 1.413 r_mcangle_it 1.104 r_angle_other_deg 0.822 r_mcbond_it 0.538 r_symmetry_vdw_other 0.246 r_nbd_other 0.24 r_nbd_refined 0.205
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_1_deg 5.91 r_scangle_it 3.204 r_scbond_it 1.88 r_angle_refined_deg 1.413 r_mcangle_it 1.104 r_angle_other_deg 0.822 r_mcbond_it 0.538 r_symmetry_vdw_other 0.246 r_nbd_other 0.24 r_nbd_refined 0.205 r_xyhbond_nbd_refined 0.153 r_symmetry_hbond_refined 0.135 r_symmetry_vdw_refined 0.104 r_nbtor_other 0.084 r_chiral_restr 0.078 r_bond_refined_d 0.014 r_gen_planes_refined 0.006 r_gen_planes_other 0.005 r_bond_other_d 0.002 r_dihedral_angle_2_deg r_dihedral_angle_3_deg r_dihedral_angle_4_deg r_nbtor_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_mcangle_other r_scbond_other r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2398 Nucleic Acid Atoms Solvent Atoms 174 Heterogen Atoms 31
Software Software Software Name Purpose REFMAC refinement MOSFLM data reduction SCALA data scaling AMoRE phasing