2BBL | pdb_00002bbl

NMR structures of the peptide linked to the genome (VPg) of poliovirus in a stabilizing solvent

SOLUTION NMR

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NMR Experiment
Experiment	Type	Sample Contents	Solvent	Ionic Strength	pH	Pressure	Temperature (K)	Spectrometer
1	2D TOCSY	VPg 2.78 mM, 0.01 M sodium phosphate buffer, pH 7.2, 4M deuterated Trimethylamine oxide, 10% D2O	10%D2O	10mM sodium phosphate	7.2	atmospheric atm	283
2	2D NOESY	VPg 2.78 mM, 0.01 M sodium phosphate buffer, pH 7.2, 4M deuterated Trimethylamine oxide, 10% D2O	10%D2O	10mM sodium phosphate	7.2	atmospheric atm	283
3	DQF-COSY	VPg 2.78 mM, 0.01 M sodium phosphate buffer, pH 7.2, 4M deuterated Trimethylamine oxide, 10% D2O	10%D2O	10mM sodium phosphate	7.2	atmospheric atm	283

NMR Spectrometer Information
Spectrometer	Manufacturer	Model	Field Strength
1	Varian	UNITYPLUS	750
2	Varian	UNITYPLUS	600

NMR Refinement
Method	Details	Software
automatic NOE assignment in combination with distance geometry	Refinement of the NOE assignment is performed iteratively. NOAH passes geometrical constraints derived from the NOE list to DIAMOD. DIAMOD calculates a bundle of structures with least violation of the constraints. The new bundle of structures is the basis for refinement of the assignments in NOAH.	NOAH

NMR Ensemble Information
Conformer Selection Criteria	target function
Conformers Calculated Total Number	50
Conformers Submitted Total Number	10
Representative Model	1 (fewest violations)

Additional NMR Experimental Information
Details	Spectra were collected at 283K

Computation: NMR Software
#	Classification	Version	Software Name	Author
1	structure solution	NOAH	2.0	Mumenthaler, C. et al
2	structure solution	DIAMOD	2.2	Guentert, P. et al
3	data analysis	Felix
4	refinement	DIAMOD	2.2	Guentert, P. et al