X-RAY DIFFRACTION

Starting Model(s)

Initial Refinement Model(s)
TypeSourceAccession CodeDetails
experimental modelPDB 1QWY 

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, SITTING DROP4.52940.1 M Tris, 2.0 M monoammonium dihydrogen phosphate, pH 4.5, VAPOR DIFFUSION, SITTING DROP, temperature 294K
Crystal Properties
Matthews coefficientSolvent content
5.2676

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 100.434α = 90
b = 100.434β = 90
c = 103.038γ = 120
Symmetry
Space GroupP 32 2 1

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-rayCCDMARRESEARCH2004-11-23MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONMPG/DESY, HAMBURG BEAMLINE BW61.05MPG/DESY, HAMBURGBW6

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)R Sym I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
11.832097.60.0630.06327.63.3518615186131.9
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)R-Sym I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
1.831.86960.2440.2444.72019

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (All)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (All)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUT1QWY1.8319.254910349103259997.480.181310.181310.180690.19313RANDOM25.468
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
0.250.120.25-0.37
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg34.598
r_dihedral_angle_4_deg29.571
r_dihedral_angle_3_deg14.679
r_dihedral_angle_1_deg7.596
r_angle_other_deg3.997
r_scangle_it3.645
r_scbond_it3.149
r_mcangle_it1.684
r_angle_refined_deg1.592
r_mcbond_it1.566
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg34.598
r_dihedral_angle_4_deg29.571
r_dihedral_angle_3_deg14.679
r_dihedral_angle_1_deg7.596
r_angle_other_deg3.997
r_scangle_it3.645
r_scbond_it3.149
r_mcangle_it1.684
r_angle_refined_deg1.592
r_mcbond_it1.566
r_symmetry_vdw_other0.252
r_nbd_other0.23
r_nbd_refined0.19
r_nbtor_refined0.18
r_xyhbond_nbd_refined0.14
r_symmetry_hbond_refined0.134
r_nbtor_other0.113
r_symmetry_vdw_refined0.103
r_chiral_restr0.1
r_metal_ion_refined0.055
r_mcbond_other0.033
r_bond_refined_d0.014
r_gen_planes_other0.008
r_gen_planes_refined0.007
r_bond_other_d
r_xyhbond_nbd_other
r_metal_ion_other
r_symmetry_hbond_other
r_symmetry_metal_ion_refined
r_symmetry_metal_ion_other
r_rigid_bond_restr
r_sphericity_free
r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms2021
Nucleic Acid Atoms
Solvent Atoms188
Heterogen Atoms17

Software

Software
Software NamePurpose
REFMACrefinement
DENZOdata reduction
SCALEPACKdata scaling
MOLREPphasing