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Crystal structure of Mycobacterium tuberculosis enoyl reductase (InhA) inhibited by 5-pentyl-2-phenoxyphenol
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 6.8 295 PEG 4000, DMSO, ammonium acetate, NAD+, ADA , pH 6.8, VAPOR DIFFUSION, HANGING DROP, temperature 295K
Crystal Properties Matthews coefficient Solvent content 2.3 45.4
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 99.955 α = 90 b = 81.827 β = 95.69 c = 188.656 γ = 90
Symmetry Space Group C 1 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315 2004-10-10 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON NSLS BEAMLINE X25 1.1 NSLS X25
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.8 10 98.6 34761 34274 2
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 2.8 2.867 94.4
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 2.8 10 34761 34274 1872 98.55 0.245 0.245 0.242 0.2501 0.295 0.2971 RANDOM 31.682
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.87 -1.2 -0.69 1.32
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.423 r_dihedral_angle_4_deg 23.208 r_dihedral_angle_3_deg 16.72 r_dihedral_angle_1_deg 4.234 r_mcangle_it 3.326 r_scangle_it 3.041 r_mcbond_it 2.544 r_scbond_it 2.043 r_angle_refined_deg 1.48 r_angle_other_deg 1.112
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.423 r_dihedral_angle_4_deg 23.208 r_dihedral_angle_3_deg 16.72 r_dihedral_angle_1_deg 4.234 r_mcangle_it 3.326 r_scangle_it 3.041 r_mcbond_it 2.544 r_scbond_it 2.043 r_angle_refined_deg 1.48 r_angle_other_deg 1.112 r_mcbond_other 0.506 r_symmetry_hbond_refined 0.33 r_symmetry_vdw_other 0.318 r_symmetry_vdw_refined 0.272 r_nbd_refined 0.222 r_nbd_other 0.208 r_nbtor_refined 0.183 r_xyhbond_nbd_refined 0.168 r_chiral_restr 0.101 r_nbtor_other 0.09 r_xyhbond_nbd_other 0.053 r_bond_refined_d 0.016 r_symmetry_hbond_other 0.012 r_gen_planes_refined 0.005 r_bond_other_d 0.002 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 11463 Nucleic Acid Atoms Solvent Atoms Heterogen Atoms 378
Software Software Software Name Purpose DENZO data reduction SCALEPACK data scaling REFMAC refinement PDB_EXTRACT data extraction HKL-2000 data reduction AMoRE phasing