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Human estrogen receptor alpha ligand-binding domain and a glucocorticoid receptor-interacting protein 1 NR box II peptide
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1ZKY PDB ENTRY 1ZKY
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 4.5 pH 4.50
Crystal Properties Matthews coefficient Solvent content 2 39.4
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 54.372 α = 90 b = 80.905 β = 109.68 c = 58.241 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 77 CCD ADSC QUANTUM 315 2005-08-09 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 14-BM-C APS 14-BM-C
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2 30 94.5 0.065 13.965 3.1 30529
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2 2.07 94.7 0.392 2.318 3
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 1ZKY 2.1 30 24941 1338 94.49 0.2172 0.21414 0.2163 0.27211 0.2713 RANDOM 33.637
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.32 0.51 0.8 -0.14
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.759 r_dihedral_angle_4_deg 20.302 r_dihedral_angle_3_deg 18.919 r_scangle_it 7.185 r_scbond_it 5.335 r_dihedral_angle_1_deg 4.932 r_mcangle_it 3.46 r_mcbond_it 2.39 r_angle_refined_deg 1.157 r_symmetry_hbond_refined 0.394
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.759 r_dihedral_angle_4_deg 20.302 r_dihedral_angle_3_deg 18.919 r_scangle_it 7.185 r_scbond_it 5.335 r_dihedral_angle_1_deg 4.932 r_mcangle_it 3.46 r_mcbond_it 2.39 r_angle_refined_deg 1.157 r_symmetry_hbond_refined 0.394 r_nbtor_refined 0.315 r_nbd_refined 0.235 r_symmetry_vdw_refined 0.177 r_xyhbond_nbd_refined 0.168 r_chiral_restr 0.079 r_bond_refined_d 0.009 r_gen_planes_refined 0.004
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3872 Nucleic Acid Atoms Solvent Atoms 30 Heterogen Atoms
Software Software Software Name Purpose REFMAC refinement SCALEPACK data scaling XTALVIEW refinement HKL-2000 data collection HKL-2000 data reduction