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Structure of DraD invasin from uropathogenic Escherichia coli
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 6 293 NaCl, Hepes, glycerol, PEG-2000 MME, MES, pH 6.0, VAPOR DIFFUSION, HANGING DROP, temperature 293K
Crystal Properties Matthews coefficient Solvent content 1.91 35
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 33.59 α = 90 b = 61.82 β = 90 c = 112.2 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARRESEARCH mirrors 2005-07-05 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 22-ID 1.000 APS 22-ID
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.05 30 100 0.066 21.4 5.6 109502 108822 -3 9.1
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.05 1.09 97.6 0.388 2.9 4.6 10677
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT 1.05 29.49 108805 106622 2183 100 0.15104 0.15104 0.15069 0.1536 0.16768 0.1436 RANDOM 12.984
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.65 -0.23 -0.42
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_1_deg 7.02 r_sphericity_free 5.4 r_scangle_it 5.326 r_sphericity_bonded 4.352 r_scbond_it 3.607 r_mcangle_it 3.588 r_mcbond_it 2.353 r_rigid_bond_restr 1.832 r_angle_refined_deg 1.667 r_angle_other_deg 0.863
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_1_deg 7.02 r_sphericity_free 5.4 r_scangle_it 5.326 r_sphericity_bonded 4.352 r_scbond_it 3.607 r_mcangle_it 3.588 r_mcbond_it 2.353 r_rigid_bond_restr 1.832 r_angle_refined_deg 1.667 r_angle_other_deg 0.863 r_symmetry_vdw_other 0.337 r_symmetry_vdw_refined 0.277 r_nbd_other 0.269 r_nbd_refined 0.198 r_xyhbond_nbd_refined 0.184 r_symmetry_hbond_refined 0.161 r_chiral_restr 0.126 r_nbtor_other 0.089 r_bond_refined_d 0.015 r_gen_planes_refined 0.01 r_gen_planes_other 0.009 r_bond_other_d 0.002
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2070 Nucleic Acid Atoms Solvent Atoms 291 Heterogen Atoms 7
Software Software Software Name Purpose REFMAC refinement HKL-2000 data reduction SCALEPACK data scaling SHELXD phasing SHELXE model building