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Structure of the complex of PurE with NitroAIR
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1QCZ PDB entry 1QCZ
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 8 298 PEG400, magnesium chloride, Tris.Hcl., pH 8.0, VAPOR DIFFUSION, HANGING DROP, temperature 298K
Crystal Properties Matthews coefficient Solvent content 2.2 43.4
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 112.495 α = 90 b = 112.495 β = 90 c = 49.796 γ = 90
Symmetry Space Group I 4 2 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD BRANDEIS monochromator M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON NSLS BEAMLINE X12C 1.000 NSLS X12C
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.8 30 89.9 0.072 2.5 13604 13604
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.8 1.86 69.1 0.249
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB entry 1QCZ 1.8 30 13024 12357 667 86.06 0.20232 0.15163 0.14897 0.1638 0.20232 0.1718 RANDOM 14.888
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.62 -0.62 1.23
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 41.89 r_dihedral_angle_4_deg 20.983 r_dihedral_angle_3_deg 11.996 r_dihedral_angle_1_deg 5.442 r_scangle_it 4.295 r_scbond_it 3.264 r_angle_refined_deg 1.818 r_mcangle_it 1.33 r_mcbond_it 1.157 r_angle_other_deg 0.885
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 41.89 r_dihedral_angle_4_deg 20.983 r_dihedral_angle_3_deg 11.996 r_dihedral_angle_1_deg 5.442 r_scangle_it 4.295 r_scbond_it 3.264 r_angle_refined_deg 1.818 r_mcangle_it 1.33 r_mcbond_it 1.157 r_angle_other_deg 0.885 r_mcbond_other 0.278 r_nbd_refined 0.207 r_symmetry_vdw_other 0.206 r_nbd_other 0.174 r_nbtor_refined 0.165 r_xyhbond_nbd_refined 0.158 r_symmetry_hbond_refined 0.111 r_chiral_restr 0.091 r_nbtor_other 0.085 r_symmetry_vdw_refined 0.079 r_bond_refined_d 0.018 r_gen_planes_refined 0.008 r_bond_other_d 0.001 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1197 Nucleic Acid Atoms Solvent Atoms 153 Heterogen Atoms 22
Software Software Software Name Purpose REFMAC refinement DENZO data reduction SCALEPACK data scaling CNS phasing