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Crystal Structure of the beta-chain of HGFl/MSP
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1BUI
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION 6.1 292 1.4 M NaH2PO4, 0.93 M K2HPO4, CAPS pH 10.5, Li2SO4 0.1 M, pH 6.1, VAPOR DIFFUSION, temperature 292K
Crystal Properties Matthews coefficient Solvent content 2.43 49.28
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 75.676 α = 90 b = 75.848 β = 90 c = 47.973 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARRESEARCH 2003-09-03 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID13 0.979 ESRF ID13
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.85 50 98.4 0.06 0.06 14.1 5.8 23920 23920 21.7
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1.85 1.89 98.3 0.416 0.416
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1BUI 1.85 50 22661 22661 1221 97.82 0.1999 0.1999 0.19802 0.23678 0.2558 RANDOM 25.129
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.9 1.08 -0.18
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_1_deg 6.169 r_scangle_it 5.502 r_mcangle_it 4.352 r_scbond_it 3.853 r_mcbond_it 3.36 r_angle_refined_deg 1.599 r_angle_other_deg 0.855 r_symmetry_vdw_other 0.29 r_nbd_other 0.241 r_xyhbond_nbd_refined 0.219
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_1_deg 6.169 r_scangle_it 5.502 r_mcangle_it 4.352 r_scbond_it 3.853 r_mcbond_it 3.36 r_angle_refined_deg 1.599 r_angle_other_deg 0.855 r_symmetry_vdw_other 0.29 r_nbd_other 0.241 r_xyhbond_nbd_refined 0.219 r_nbd_refined 0.186 r_symmetry_hbond_refined 0.156 r_chiral_restr 0.099 r_nbtor_other 0.083 r_symmetry_vdw_refined 0.041 r_bond_refined_d 0.017 r_gen_planes_refined 0.007 r_gen_planes_other 0.003 r_bond_other_d 0.002
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1730 Nucleic Acid Atoms Solvent Atoms 155 Heterogen Atoms
Software Software Software Name Purpose REFMAC refinement XDS data reduction SCALEPACK data scaling AMoRE phasing