X-RAY DIFFRACTION

Starting Model(s)

Initial Refinement Model(s)
TypeSourceAccession CodeDetails
experimental modelPDB 1FQVPDB entry 1FQV

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, HANGING DROP8.5277PEG8K, 5% benzamidine, pH 8.5, VAPOR DIFFUSION, HANGING DROP, temperature 277K
Crystal Properties
Matthews coefficientSolvent content
4.975

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 148.7α = 90
b = 148.7β = 90
c = 98.8γ = 120
Symmetry
Space GroupP 32 2 1

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray173IMAGE PLATERIGAKUmirrors2005-08-08MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONAPS BEAMLINE 24-ID-C0.97946APS24-ID-C

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)R Sym I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
12.32099.90.0560.056356.5558495584922
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)R-Sym I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
12.32.381000.4220.422465513

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (All)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (All)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUTPDB entry 1FQV2.3205299652996282699.910.20280.20280.201780.22109RANDOM57.844
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
-0.49-0.25-0.490.74
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg37.743
r_dihedral_angle_4_deg19.929
r_dihedral_angle_3_deg14.907
r_dihedral_angle_1_deg5.151
r_scangle_it4.186
r_mcangle_it3.12
r_scbond_it2.76
r_mcbond_it2.008
r_angle_refined_deg1.085
r_nbtor_refined0.298
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg37.743
r_dihedral_angle_4_deg19.929
r_dihedral_angle_3_deg14.907
r_dihedral_angle_1_deg5.151
r_scangle_it4.186
r_mcangle_it3.12
r_scbond_it2.76
r_mcbond_it2.008
r_angle_refined_deg1.085
r_nbtor_refined0.298
r_symmetry_vdw_refined0.195
r_nbd_refined0.189
r_symmetry_hbond_refined0.153
r_xyhbond_nbd_refined0.135
r_chiral_restr0.072
r_bond_refined_d0.007
r_gen_planes_refined0.003
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms4377
Nucleic Acid Atoms
Solvent Atoms265
Heterogen Atoms18

Software

Software
Software NamePurpose
REFMACrefinement
HKL-2000data reduction
SCALEPACKdata scaling
AMoREphasing